genome.fa.s10820.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010820.1 Corchorus capsularis cultivar CVL-1 contig10841, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89799

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5397--5469	21	3.3	20	75	16	65	8	26	46	19	1.77
13833--14370	273	2.0	267	97	2	1004	31	10	19	37	1.86
15495--15524	1	30.0	1	100	0	60	100	0	0	0	0.00
16226--16257	3	10.3	3	93	6	55	65	0	0	34	0.93
17048--17075	7	4.0	7	100	0	56	28	28	28	14	1.95
18731--18807	34	2.3	34	95	4	140	15	36	29	18	1.92
18846--18890	23	2.0	23	91	8	74	20	35	28	15	1.93
18942--18980	7	5.6	7	85	11	53	38	0	2	58	1.12
18941--18999	25	2.2	25	82	8	64	40	1	5	52	1.33
22890--23082	37	5.2	37	94	1	316	45	9	21	23	1.82
23154--23269	37	3.2	36	83	9	130	51	13	10	24	1.72
23262--23498	37	6.7	37	80	12	275	40	8	24	26	1.82
23324--23383	19	3.2	19	65	21	54	41	5	30	23	1.75
23305--23479	69	2.5	71	91	4	273	40	7	26	25	1.82
23262--23497	106	2.2	105	92	3	386	41	7	25	26	1.82
23491--23642	74	2.1	72	87	2	214	38	9	21	29	1.86
23491--23642	37	4.2	36	86	7	191	38	9	21	29	1.86
24628--24688	25	2.5	25	97	2	115	19	42	4	32	1.73
25902--25975	32	2.3	33	83	6	98	18	31	35	14	1.92
29751--30000	125	2.0	125	99	0	491	31	20	21	26	1.98
32849--33553	49	14.4	47	83	7	700	32	14	30	22	1.94
32874--33554	147	4.6	147	86	3	870	31	14	30	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32923--33554	49	12.9	49	86	5	717	31	14	30	22	1.94
34926--34954	14	2.1	14	93	6	51	6	0	10	82	0.83
36464--36513	23	2.1	24	88	3	75	50	10	6	34	1.60
38650--38682	16	2.0	17	88	5	50	48	3	3	45	1.33
38701--38750	26	2.0	25	84	11	66	36	2	10	52	1.47
39065--39117	25	2.1	25	92	0	88	49	24	11	15	1.77
40023--40112	25	3.4	26	68	20	78	17	17	10	54	1.70
40020--40130	55	2.0	55	100	0	222	19	18	9	53	1.71
40041--40125	25	3.2	25	64	20	64	20	16	9	54	1.69
41966--41999	2	17.5	2	93	6	61	50	0	0	50	1.00
43234--43287	15	3.8	13	79	16	54	83	5	7	3	0.91
44289--44327	10	3.8	10	86	6	60	0	15	2	82	0.79
52954--53025	33	2.2	33	87	5	101	8	27	41	22	1.82
53273--53406	72	1.9	72	93	3	234	15	36	24	23	1.94
53397--53498	51	2.0	50	94	1	177	19	25	25	29	1.99
53503--53596	50	1.9	50	85	8	131	15	26	29	27	1.96
53525--53636	50	2.3	49	85	4	145	16	26	32	25	1.96
53898--54125	90	2.5	90	86	2	312	38	16	12	32	1.86
54253--54295	20	2.1	21	86	4	61	18	41	6	32	1.77
55410--55473	22	2.9	21	71	19	51	18	34	14	32	1.91
55464--55529	26	2.6	25	80	4	78	12	31	28	27	1.92
55506--55866	118	3.1	116	83	6	451	11	31	27	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55699--55769	25	2.8	25	81	8	90	12	28	29	29	1.93
55978--56076	25	4.0	25	81	0	90	11	32	27	29	1.91
55772--56858	161	6.8	161	84	2	1351	10	30	28	30	1.91
56133--56206	25	3.0	25	86	4	105	4	32	36	27	1.76
56124--56220	50	1.9	50	81	4	115	8	31	32	26	1.86
56133--56231	50	2.0	50	80	4	110	7	33	32	27	1.84
56474--56528	25	2.2	25	83	0	65	1	27	34	36	1.68
56615--56688	25	3.0	25	87	0	103	1	33	37	27	1.65
56782--56821	20	2.0	21	90	5	64	7	40	32	20	1.80
61886--62026	33	4.3	33	85	7	144	8	26	43	21	1.81
61886--62026	66	2.1	65	84	5	176	8	26	43	21	1.81
67374--67419	23	2.0	24	86	4	67	23	15	17	43	1.87
72948--73088	33	4.3	32	82	7	122	10	28	41	19	1.84
75613--75690	29	2.7	30	82	13	92	25	7	15	51	1.70
77955--78301	156	2.2	155	79	8	357	34	20	15	29	1.94
86987--87086	33	3.1	33	82	7	107	23	40	27	10	1.86
87005--87117	33	3.4	33	87	2	129	23	42	24	8	1.83
87523--87623	28	3.7	27	75	13	100	20	12	23	42	1.87

Tables:   1

The End!