Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010833.1 Corchorus capsularis cultivar CVL-1 contig10854, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5379
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:978 original size:333 final size:331
Alignment explanation
Indices: 49--2847 Score: 4300
Period size: 333 Copynumber: 8.4 Consensus size: 331
39 AGTTATTACG
*
49 TATATTTATCTACCCAAATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGCATCAGAAT
1 TATATTCATCTA-CCAAATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGCATCAGAAT
* *
114 CCAATTTCAA-TT-ACTGG-AATT-ATTC-G-AAAGCATAGGAAAAGCTGTATTCGAAGCGCGAA
65 CCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAAACTGTATTCGAAGCGCGAA
* * *
173 AAACCCTTCAAAAATTTTGGCATTGATTTGA-ATA-TTTTTATACGTATTTTGGCCAAAAATTGA
130 AAACCCTTCAAACATTTTGGCGTTGATTT-ATATATTTTTTATAAGTATTTTGGCCAAAAATTGA
* *
236 GGAAAAATCAATCGGGTCAATTTTTACAAAATCTTGACCGAAACCGTGTGCTAATCATCACGATT
194 GGAAAAATCATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAATCATCACGATT
* * * * * * *
301 TTTGGATAAAAACGCGTTCCGGGGTCTCGACTCTGTTTTGTGAGATTTTTGGC-TCAAGAATCCT
259 TTTGGCT-AAAACGCGTTCCAGGGTCCCGGCTCAGTTTTGTGTGATTTTTGGCGCCAAGAATCCT
365 TGGATTATC
323 TGGATTATC
*
374 TATATTCATCTACCAAAATCTCATCCACATACGATTTAAAGATTTGTTTTTACGAGCATCAGAAT
1 TATATTCATCTACC-AAATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGCATCAGAAT
* * *
439 CCAGTTTCGATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAAACTATATTAGAAGCGCGAA
65 CCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAAACTGTATTCGAAGCGCGAA
* * *
504 AACCCCTTCAAACATTTTGGCGTTGATTTATATAGTTTTTATAAGTATTTTGGCCAAAAATTTAG
130 AAACCCTTCAAACATTTTGGCGTTGATTTATATATTTTTTATAAGTATTTTGGCCAAAAATTGAG
* * *
569 GAAAAATAATAT-GGGTCAGTATTTGCAAAATCTTGACCGAAACCGTGTGCTAATCATCACGATT
195 GAAAAATCAT-TCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAATCATCACGATT
633 TTTGGCTAAAACGCGTTCCAGGGTCCCGGCTCAGTTTTGTGTGATTTTTGGCGCCAAGAATCCTT
259 TTTGGCTAAAACGCGTTCCAGGGTCCCGGCTCAGTTTTGTGTGATTTTTGGCGCCAAGAATCCTT
698 GGATTATC
324 GGATTATC
706 TATATTCATCTATCCAAATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGCATCAGAAT
1 TATATTCATCTA-CCAAATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGCATCAGAAT
*
771 CCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAATGCTGTATTCGAAGCGCGA
65 CCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAA-ACTGTATTCGAAGCGCGA
*
836 AAAACCCTTCAAACATTTTGGCGTTGATTTGA-ATATTTTTTATACGTATTTTGGCCAAAAATTG
129 AAAACCCTTCAAACATTTTGGCGTTGATTT-ATATATTTTTTATAAGTATTTTGGCCAAAAATTG
*
900 AGGAAAAATCATTCGGGTCAATTTTTACAAAATCTTGACCGAAACCGTGTGCTAATCATCACGAT
193 AGGAAAAATCATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAATCATCACGAT
* *
965 TTTTGGCTAAAACGCGTTCCAGGGTCCCGGCTCAGTTTTGTGTGATTTTTGACGTCAAGAATCCT
258 TTTTGGCTAAAACGCGTTCCAGGGTCCCGGCTCAGTTTTGTGTGATTTTTGGCGCCAAGAATCCT
1030 TGGATTATC
323 TGGATTATC
* *
1039 TATTTTCATCTACCCATATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGCAAT-AGAA
1 TATATTCATCTA-CCAAATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGC-ATCAGAA
** * * *
1103 TCCAACTTCAATTTAACTGGATATTAAATCGGAAAAGCATAGGAAAGAGCTGTATTCGAAGCGCG
64 TCCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAA-AACTGTATTCGAAGCGCG
* *
1168 AAAAACCCTTCAAACATTTTGGCGTTGATTTGA-ATTTTTTTTATACGTATTTTGGCCAAAAATT
128 AAAAACCCTTCAAACATTTTGGCGTTGATTT-ATATATTTTTTATAAGTATTTTGGCCAAAAATT
1232 GAGGAAAAATCATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAATCATCACGA
192 GAGGAAAAATCATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAATCATCACGA
* * *
1297 TTTTTGGCTAAAAATGCGTTCC-GGGGCCCGGCTCAGTTTTGTGTGATTTTTTGCGCCAAGAATC
257 TTTTTGGCT-AAAACGCGTTCCAGGGTCCCGGCTCAGTTTTGTGTGATTTTTGGCGCCAAGAATC
*
1361 CTTAGATTATC
321 CTTGGATTATC
1372 TATATTCATCTACCAAAATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGCATCAGAAT
1 TATATTCATCTACC-AAATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGCATCAGAAT
* * *
1437 CCAGTTTCGATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAAACTATATTAGAAGCGCGAA
65 CCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAAACTGTATTCGAAGCGCGAA
* *
1502 AAACCCTTCAAACATTTTGGCCTTGATTTATATATTTTTTATAAGTATTTTCGCCAAAAATTGAG
130 AAACCCTTCAAACATTTTGGCGTTGATTTATATATTTTTTATAAGTATTTTGGCCAAAAATTGAG
1567 GAAAAATCATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAATCATCACGATTT
195 GAAAAATCATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAATCATCACGATTT
1632 TTGGCTAAAAACGCGTTCCAGGGTCCCGGCTCAGTTTTGTGTGATTTTTGGCGCCAAGAATCCTT
260 TTGGCT-AAAACGCGTTCCAGGGTCCCGGCTCAGTTTTGTGTGATTTTTGGCGCCAAGAATCCTT
1697 GGATTATC
324 GGATTATC
*
1705 TATATTGATCTATCCAAATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGCATCAGAAT
1 TATATTCATCTA-CCAAATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGCATCAGAAT
* *
1770 GCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAAACTATATTCGAAGCGCGAA
65 CCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAAACTGTATTCGAAGCGCGAA
*
1835 AAACCCCTTCAAACATTTTGGCGTTGATTTATATATTTTTTATAAGTATTTTGGCCAAAAATTTA
130 AAA-CCCTTCAAACATTTTGGCGTTGATTTATATATTTTTTATAAGTATTTTGGCCAAAAATTGA
* *
1900 GGAAAAATCATAT-GGGTCAGTATTTGCAAAATCTTGACCGAAACCGTGTGCTAATCATCACGAT
194 GGAAAAATCAT-TCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAATCATCACGAT
* * * * * *
1964 TTTTTGCTAAAACGCGTTGCGGGGTCCCGACTCAGTTTTGTGTAATTTTTTGCGCCAAGAATCCT
258 TTTTGGCTAAAACGCGTTCCAGGGTCCCGGCTCAGTTTTGTGTGATTTTTGGCGCCAAGAATCCT
2029 TGGATTATC
323 TGGATTATC
* * * *
2038 TAAATTCATCTATCCGAATCTCATCCACATTGGATTTAAAGATTTATTTTTACGAGCATCAGAAT
1 TATATTCATCTA-CCAAATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGCATCAGAAT
* *
2103 CCAGTTTCAATTTAACAGGAAATTAATTCGGAAAAGCATAGGAAAAAC-GTTATTCGAAGTGCGA
65 CCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAAACTG-TATTCGAAGCGCGA
*
2167 AAAACCCTTCAAACATTTTGGCGTTAATTTATATATTTTTTATAAGTATTTTGGCCAAAAATTGA
129 AAAACCCTTCAAACATTTTGGCGTTGATTTATATATTTTTTATAAGTATTTTGGCCAAAAATTGA
*
2232 GGAAAAATCATTCGGGTCAATTTTTGCAAAATCTTGACGGAAACCGTGTGCTAATCATCACGATT
194 GGAAAAATCATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAATCATCACGATT
* * *
2297 TTTGGCTACAAACGCTTTCC-GGGGCACCGGCTCAGTTTTGTGAGATTTTTGGCGCCAAGAATCC
259 TTTGGCTA-AAACGCGTTCCAGGGTC-CCGGCTCAGTTTTGTGTGATTTTTGGCGCCAAGAATCC
*
2361 TTTGATTATC
322 TTGGATTATC
* * * * *
2371 TATTTTCATCTACCCAAATCGCATCCACACAGGATTTAAAGATTTGTATTTACGAGTATCAGAAT
1 TATATTCATCTA-CCAAATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGCATCAGAAT
* ** * *
2436 CCAGTTTCGATTTAACTGGAAATTAATTCGGAAAAGCATAAAAAAAACTATATTCGAAGCGTGAA
65 CCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAAACTGTATTCGAAGCGCGAA
* * * *
2501 AAACCCTTCAAACATTTTGTCGTTGATTTGTATATTTTTTGTAAGTATTTTGGCCAAAAAATGAG
130 AAACCCTTCAAACATTTTGGCGTTGATTTATATATTTTTTATAAGTATTTTGGCCAAAAATTGAG
*
2566 GAAAAATCATTCAGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAATCATCACGATTT
195 GAAAAATCATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAATCATCACGATTT
* * * * * * *
2631 TTGGCAAAAAAACGCGTTACCGGGGTCTCGGCTCAGTTTTGTGTGATTTTTGGCTCAAAAAATAC
260 TTGGC--TAAAACGCGTT-CCAGGGTCCCGGCTCAGTTTTGTGTGATTTTTGGCGCCAAGAATCC
2696 TTGGATTATC
322 TTGGATTATC
* * * * *
2706 TATATTTATCTACTAAAATCTCACCCACTTAGGATTTAAAGATTTGTTTTTACGAGCATCAGAAG
1 TATATTCATCTAC-CAAATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGCATCAGAAT
* * * *
2771 CCAGTTTCGATTTAACTGGAAATTAATTCCGAAAAGCTTAGGAAAAACTGTATTTGAAGCGCGAA
65 CCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAAACTGTATTCGAAGCGCGAA
*
2836 AAATCCTTCAAA
130 AAACCCTTCAAA
2848 AATTGAGGAA
Statistics
Matches: 2277, Mismatches: 162, Indels: 60
0.91 0.06 0.02
Matches are distributed among these distances:
324 2 0.00
325 68 0.03
326 2 0.00
327 5 0.00
328 4 0.00
329 4 0.00
330 2 0.00
331 101 0.04
332 510 0.22
333 1257 0.55
334 151 0.07
335 167 0.07
336 4 0.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (331 bp):
TATATTCATCTACCAAATCTCATCCACATAGGATTTAAAGATTTGTTTTTACGAGCATCAGAATC
CAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAAACTGTATTCGAAGCGCGAAA
AACCCTTCAAACATTTTGGCGTTGATTTATATATTTTTTATAAGTATTTTGGCCAAAAATTGAGG
AAAAATCATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAATCATCACGATTTT
TGGCTAAAACGCGTTCCAGGGTCCCGGCTCAGTTTTGTGTGATTTTTGGCGCCAAGAATCCTTGG
ATTATC
Found at i:3080 original size:287 final size:289
Alignment explanation
Indices: 2555--3134 Score: 898
Period size: 287 Copynumber: 2.0 Consensus size: 289
2545 GTATTTTGGC
*
2555 CAAAAAATGAGGAAAAATCATTCAGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAAT
1 CAAAAAATGAGGAAAAATCATTCAGGTCAATATTTGCAAAATCTTGACCGAAACCGTGTGCTAAT
* *
2620 CATCACGATTTTTGGCAAAAAAACGCGTTACCGGGGTCTCGGCTCAGTTTTGTGTGATTTTTGGC
66 CATCACGATTTTTGGCAAAAAAACACGTTACCGGGGTCTCGGCTCAGTTTTGTGAGATTTTTGGC
* * *
2685 TCAAAAAATACTTGGATTATCTATATTTATCTACTAAAATCTCACCCACTTAGGATTTAAAGATT
131 GCAAAAAATACTTGGATTATCTATATTCATCTACTAAAATCTCACCCACATAGGATTTAAAGATT
* *
2750 TGTTTTTACGAGCATCAGAAGCCAGTTTCGATTTAACTGGAAATTAATTCCGAAAAGCTTAGGAA
196 TGTTTTTACGAGCATCAGAAGCCAGTTTCAATTTAACTGGAAATTAATTCCGAAAAGCATAGGAA
* * * *
2815 AAACTGTATTTGAAGCGCGAAAAATCCTT
261 AAACTATATTCGAAGCGCAAAAAACCCTT
* * *
2844 CAAAAATTGAGGAAAAATTATTC-GAGTCAATATTTGCAAAATCTTGACCGATACCGTGTGCTAA
1 CAAAAAATGAGGAAAAATCATTCAG-GTCAATATTTGCAAAATCTTGACCGAAACCGTGTGCTAA
* *
2908 TTATCACGATTTTTGGC-TAAAAACACGTT-CCGGGGTCTCGGCTCAGTTTTGTGAGATTTTTGG
65 TCATCACGATTTTTGGCAAAAAAACACGTTACCGGGGTCTCGGCTCAGTTTTGTGAGATTTTTGG
* * * * *
2971 CGCCAAGAATCCTTGGATTATCTATATTCATCTA-TCCAAATCTCATCCACATAGGATTTAAAGA
130 CGCAAAAAATACTTGGATTATCTATATTCATCTACT-AAAATCTCACCCACATAGGATTTAAAGA
* *
3035 TTTGTTTTTACGAGCATCAGAATCCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGG
194 TTTGTTTTTACGAGCATCAGAAGCCAGTTTCAATTTAACTGGAAATTAATTCCGAAAAGCATAGG
3100 AAAAACTATATTCGAAGCGCAAAAAACCCTT
259 AAAAACTATATTCGAAGCGCAAAAAACCCTT
3131 CAAA
1 CAAA
3135 CATTTTGGCG
Statistics
Matches: 265, Mismatches: 24, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
286 1 0.00
287 179 0.68
288 11 0.04
289 74 0.28
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (289 bp):
CAAAAAATGAGGAAAAATCATTCAGGTCAATATTTGCAAAATCTTGACCGAAACCGTGTGCTAAT
CATCACGATTTTTGGCAAAAAAACACGTTACCGGGGTCTCGGCTCAGTTTTGTGAGATTTTTGGC
GCAAAAAATACTTGGATTATCTATATTCATCTACTAAAATCTCACCCACATAGGATTTAAAGATT
TGTTTTTACGAGCATCAGAAGCCAGTTTCAATTTAACTGGAAATTAATTCCGAAAAGCATAGGAA
AAACTATATTCGAAGCGCAAAAAACCCTT
Found at i:3626 original size:333 final size:332
Alignment explanation
Indices: 2844--5254 Score: 3381
Period size: 333 Copynumber: 7.2 Consensus size: 332
2834 AAAAATCCTT
* * *
2844 CAAAAATTGAGGAAAAATTATTCGAGTCAATATTTGCAAAATCTTGACCGATACCGTGTGCTAAT
1 CAAAAATTGAGGAAAAATTATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAAT
* * *
2909 TATCACGATTTTTGGCTAAAAACACGTTCCGGGGTCTCGGCTCAGTTTTGTGAGATTTTTGGCGC
66 CATCACGATTTTTGGCTAAAAACGCGTTCCGGGGTCCCGGCTCAGTTTTGTGAGATTTTTGGCGC
*
2974 CAAGAATCCTTGGATTATCTATATTCATCTATCCAAATCTCATCCACATAGGATTTAAAGATTTG
131 CAAGAATCCTTGGATTATCTATATTCATCTACCCAAATCTCATCCACATAGGATTTAAAGATTTG
3039 TTTTTACGAGCATCAGAATCCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAA
196 TTTTTACGAGCATCAGAATCCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAA
* * *
3104 ACTATATTCGAAGCGCAAAAAACCCTTCAAACATTTTGGCGTTGATTTCTATATTTTGTATAAGT
261 ACTATATTCGAAGCGCGAAAAACCCTTCAAACATTTTGGCGTTGATTT-AATATTTTTTATAAGT
3169 ATTTTGGC
325 ATTTTGGC
* * * *
3177 CAGAAATTGAGGAAAAATTATTCGGATCAATATTTGCAAAATCTTCACCGAAACCGTGTGCTAAT
1 CAAAAATTGAGGAAAAATTATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAAT
* * * ** * *
3242 CATCACGATTTTTGGATAAAAACGAGTTTCGGGGTATCGACTCTGTTTTGTGAGATTTTTGGCGC
66 CATCACGATTTTTGGCTAAAAACGCGTTCCGGGGTCCCGGCTCAGTTTTGTGAGATTTTTGGCGC
*
3307 CAAGAATCCTTGGATTATCTATCTTCATCTACCCAAATCTCATCCACATAGGATTTAAAGATTTG
131 CAAGAATCCTTGGATTATCTATATTCATCTACCCAAATCTCATCCACATAGGATTTAAAGATTTG
*
3372 TTTTTACGAGCATCAGAATCCAGTTTCAATTTAACTAGAAATTAATTCGGAAAAGCATAGGAAAA
196 TTTTTACGAGCATCAGAATCCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAA
* * *
3437 AGCTGTATTCGAAGCGCGAAAAACCCTTCAAACATTTTGGCGTTGATTTGAATATTCTTTATACG
261 A-CTATATTCGAAGCGCGAAAAACCCTTCAAACATTTTGGCGTTGATTT-AATATTTTTTATAAG
3502 TATTTTGGC
324 TATTTTGGC
* * * * *
3511 CAAAAATTGAGGAAAAATCATTCGGGTCAATTTTTACAAAATCTCGACAGAAACCGTGAGCTAAT
1 CAAAAATTGAGGAAAAATTATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAAT
* * * * * *
3576 CATTACGATTTTTGGCT-AAAACGCGTTCCAGGGTCCCGGCTCAATTTTGTGTGATTTTTGACGT
66 CATCACGATTTTTGGCTAAAAACGCGTTCCGGGGTCCCGGCTCAGTTTTGTGAGATTTTTGGCGC
* * * *
3640 CAAGAATTCTTGGATTATCTATTTTCATCTACCCATATCTCATCCACATAGGATTTAAAGATTTT
131 CAAGAATCCTTGGATTATCTATATTCATCTACCCAAATCTCATCCACATAGGATTTAAAGATTTG
*
3705 TTTTTACGAGCATCAGAATCCAGTTTCAATTTAACTAGAAATTAATTCGGAAAAGCATAGGAAAA
196 TTTTTACGAGCATCAGAATCCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAA
*
3770 ACTATATTAGAAGCGCGAAAAACCCTTCAAACATTTTGGCGTTGATTTATATATTTTTTATAAGT
261 ACTATATTCGAAGCGCGAAAAACCCTTCAAACATTTTGGCGTTGATTTA-ATATTTTTTATAAGT
3835 ATTTTGGC
325 ATTTTGGC
* *
3843 CAAAAATTGAGGAAAAATCATTCGGGTCAACTTTTGCAAAATCTTGACCGAAACCGTGTGCTAAT
1 CAAAAATTGAGGAAAAATTATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAAT
* * *
3908 CATCACGATTTTTGGCTAAAAACGCGTTCCGGGGTACCGGCTCAGTTTTGTGTGATTTTTGGCAC
66 CATCACGATTTTTGGCTAAAAACGCGTTCCGGGGTCCCGGCTCAGTTTTGTGAGATTTTTGGCGC
* *
3973 CAAGAATCCTTGGATTATCTATATTGATCTATCCAAATCTCATCCACATAGGATTTAAAGATTTG
131 CAAGAATCCTTGGATTATCTATATTCATCTACCCAAATCTCATCCACATAGGATTTAAAGATTTG
*
4038 TTTTTACGAGCATCAGAATCCAGTTTCGATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAA
196 TTTTTACGAGCATCAGAATCCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAA
* *
4103 ACTATATTCGAAGCGCGAAAAACCCTTCAAACATTTTGACGTTGATTTATATATTTTTTATAACT
261 ACTATATTCGAAGCGCGAAAAACCCTTCAAACATTTTGGCGTTGATTTA-ATATTTTTTATAAGT
4168 ATTTTGGC
325 ATTTTGGC
4176 CAAAAATTGAGGAAAAATTATTCGGGTCAATCTTTTGCAAAATCTTGACCGAAACCGTGTGCTAA
1 CAAAAATTGAGGAAAAATTATTCGGGTCAAT-TTTTGCAAAATCTTGACCGAAACCGTGTGCTAA
* * *
4241 TCATCACGATTTTTGGCTAAAAACGCGTT-TGGGGTAACCAGCTCAGTTTTGTGAGATTTTTGGC
65 TCATCACGATTTTTGGCTAAAAACGCGTTCCGGGGT-CCCGGCTCAGTTTTGTGAGATTTTTGGC
* *
4305 GCCAAGAATCCTTGGATTATCTATATTCATCTACCAAAATCTCACCCACATAGGATTTAAAGATT
129 GCCAAGAATCCTTGGATTATCTATATTCATCTACCCAAATCTCATCCACATAGGATTTAAAGATT
* * * * * *
4370 TGCTTTTACGACCAACAGAATGCAGTTTCATTTTAACTGGAAATTAATTCAGAAAAGCATAGGAA
194 TGTTTTTACGAGCATCAGAATCCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAA
* * * *
4435 AAACTGTATTTGAAGCGCG-AAAACCCTTCAAACATTTTGGCGTTGATTTGTATATTTTTTATAC
259 AAACTATATTCGAAGCGCGAAAAACCCTTCAAACATTTTGGCGTTGATTT-AATATTTTTTATAA
4499 GTATTTTGGC
323 GTATTTTGGC
*
4509 CAAAAATTGAGGAAAAATTATTCGGGTCAATTTTTACAAAATCTTGACCGAAACCGTGTGCTAAT
1 CAAAAATTGAGGAAAAATTATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAAT
* *
4574 CATCACGATTTTTGGCTAAAAACGCGTTCCGGGG-CACCGGCTCAGTTTTGTGTGATTTTTGGCA
66 CATCACGATTTTTGGCTAAAAACGCGTTCCGGGGTC-CCGGCTCAGTTTTGTGAGATTTTTGGCG
* * *
4638 CCAAGAATCCTTGGATTATCTATATTGATCTACCAAAATCTCATGCACATAGGATTTAAAGATTT
130 CCAAGAATCCTTGGATTATCTATATTCATCTACCCAAATCTCATCCACATAGGATTTAAAGATTT
4703 GTTTTTACGAGCATCAGAATCCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAA
195 GTTTTTACGAGCATCAGAATCCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAA
* * *
4768 AACTATATTCGAAGCGCGAAAAACCCTTCAAACATTTTGACGTTGATTTCTATATTTTGTATAAG
260 AACTATATTCGAAGCGCGAAAAACCCTTCAAACATTTTGGCGTTGATTT-AATATTTTTTATAAG
4833 TATTTTGGC
324 TATTTTGGC
* * * * * *
4842 CAAAAATTGAGCAAAAATTATTCTGATCAATTTTTGCAAAATCTTGACCGAAATCATGTTCTAAT
1 CAAAAATTGAGGAAAAATTATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAAT
* * *
4907 CATCAC-AGTTTTTGGCTAAAAACGCGTTACGGGGCCCCGTCTCAGTTTTGT-ATGATTTTTGGC
66 CATCACGA-TTTTTGGCTAAAAACGCGTTCCGGGGTCCCGGCTCAGTTTTGTGA-GATTTTTGGC
* * * * * * ** * ** * *
4970 GCTAAGACTCCTTGGAATATTTATATTCAACCAACAAAAAT-TGAGGCAAATTA-GATAT-AAGA
129 GCCAAGAATCCTTGGATTATCTATATTC-ATCTACCCAAATCTCATCCACA-TAGGATTTAAAG-
* * ** * * *
5032 ATTT-TTTTTACGAGAATCTGAATCTTGTTTCGATTTAATTTAATTAGAAATTAATTCAGAATAA
191 ATTTGTTTTTACGAGCATCAGAATCCAGTTTC-----AATTTAACTGGAAATTAATTCGGAA-AA
* * * * * * *
5096 AC-TCA-GAAAAACGATATT-GAATGCGTGAAAAGCCCTTCAATCATTTCGGCGTTGAATTATAT
250 GCAT-AGGAAAAACTATATTCGAA-GCGCGAAAAACCCTTCAAACATTTTGGCGTTGATTTA-AT
** * **
5158 ATTTTTTACGAGTATTGTGAT
312 ATTTTTTATAAGTATTTTGGC
* * * * * * * *
5179 CAAAAATTGAGGAAATATAATTCGGGTCCATTTTTGCAAAATATTAACCAAAACCGTGTACTAAC
1 CAAAAATTGAGGAAAAATTATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAAT
5244 CATCACGATTT
66 CATCACGATTT
5255 GTATATTCGA
Statistics
Matches: 1875, Mismatches: 178, Indels: 46
0.89 0.08 0.02
Matches are distributed among these distances:
331 1 0.00
332 392 0.21
333 960 0.51
334 371 0.20
336 3 0.00
337 143 0.08
338 5 0.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (332 bp):
CAAAAATTGAGGAAAAATTATTCGGGTCAATTTTTGCAAAATCTTGACCGAAACCGTGTGCTAAT
CATCACGATTTTTGGCTAAAAACGCGTTCCGGGGTCCCGGCTCAGTTTTGTGAGATTTTTGGCGC
CAAGAATCCTTGGATTATCTATATTCATCTACCCAAATCTCATCCACATAGGATTTAAAGATTTG
TTTTTACGAGCATCAGAATCCAGTTTCAATTTAACTGGAAATTAATTCGGAAAAGCATAGGAAAA
ACTATATTCGAAGCGCGAAAAACCCTTCAAACATTTTGGCGTTGATTTAATATTTTTTATAAGTA
TTTTGGC
Done.