Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010835.1 Corchorus capsularis cultivar CVL-1 contig10856, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41279

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7113--7164
2
26.0
2
100
0
104
50
0
50
0
1.00
7245--7274
6
5.0
6
100
0
60
33
0
66
0
0.92
7619--7665
23
2.0
25
87
8
71
42
6
8
42
1.60
9860--9884
5
5.0
5
100
0
50
40
0
40
20
1.52
11070--11097
1
28.0
1
100
0
56
0
0
0
100
0.00
15650--15687
1
38.0
1
100
0
76
0
0
0
100
0.00
26071--26108
20
1.9
20
84
10
51
18
21
7
52
1.70
27285--27332
19
2.6
19
90
3
71
54
10
18
16
1.70
27398--27431
6
5.5
6
93
6
59
50
32
0
17
1.47
27398--27428
13
2.5
13
94
5
55
51
32
0
16
1.44

Tables:   1

The End!