Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010836.1 Corchorus capsularis cultivar CVL-1 contig10857, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69012

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8255--8305
26
1.9
26
84
4
66
41
17
0
41
1.50
11154--11205
26
2.0
26
88
7
79
23
11
17
48
1.79
14405--14451
24
2.0
24
91
0
76
27
19
10
42
1.84
15174--15213
2
20.5
2
94
5
73
50
0
0
50
1.00
17401--17425
1
25.0
1
100
0
50
0
0
0
100
0.00
29347--29378
1
32.0
1
100
0
64
100
0
0
0
0.00
31244--31291
22
2.3
20
86
10
62
39
25
16
18
1.91
31211--31313
53
1.9
53
86
0
143
36
26
19
17
1.94
33123--33150
3
9.3
3
100
0
56
32
0
0
67
0.91
35126--35158
2
16.5
2
100
0
66
51
0
0
48
1.00
35716--35790
3
24.7
3
70
22
50
1
33
2
62
1.17
35716--35790
12
6.2
13
72
18
63
1
33
2
62
1.17
35719--35791
24
2.9
24
78
13
76
1
34
2
61
1.19
35717--35790
15
4.6
16
72
23
57
1
32
2
63
1.17
35743--35801
21
2.8
20
77
12
66
3
35
1
59
1.24
37036--37070
6
5.8
6
96
0
61
85
0
11
2
0.69
39145--39177
8
4.2
8
88
3
50
87
0
12
0
0.53
39485--39511
5
5.4
5
100
0
54
77
0
22
0
0.76
42138--42163
6
4.3
6
100
0
52
19
15
0
65
1.27
42473--42595
30
4.1
30
90
0
147
47
24
21
5
1.72
42539--42600
18
3.8
18
66
24
55
48
29
16
6
1.70
44407--44441
3
11.7
3
100
0
70
68
0
0
31
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45060--45091
6
5.2
6
96
3
55
50
0
0
50
1.00
45524--45577
27
2.0
27
100
0
108
51
3
14
29
1.60
45521--45569
14
3.6
14
72
5
55
53
4
14
28
1.59
56850--56875
7
3.7
7
100
0
52
46
11
26
15
1.80
63896--63930
6
5.8
6
100
0
70
31
34
0
34
1.58
65035--65074
7
6.0
7
88
11
66
42
12
15
30
1.83
67353--67386
6
5.7
6
96
0
59
29
50
17
2
1.61

Tables:   1

The End!