genome.fa.s10839.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010839.1 Corchorus capsularis cultivar CVL-1 contig10860, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137938

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7409--7585	87	2.0	87	93	0	300	14	32	9	43	1.77
14159--14194	2	18.0	2	94	0	63	47	0	0	52	1.00
15780--15826	22	2.1	22	96	0	85	42	4	6	46	1.48
15780--15822	11	3.9	11	90	0	68	41	4	6	46	1.51
16721--16766	20	2.4	19	85	7	65	19	15	19	45	1.85
19114--19171	12	4.7	13	78	16	61	55	8	1	34	1.41
20329--20494	60	2.8	60	89	0	260	33	17	21	27	1.96
20329--20489	31	5.3	30	66	8	103	34	17	21	27	1.95
20524--20591	31	2.2	31	89	0	100	23	22	16	38	1.93
20552--20714	60	2.7	60	88	1	238	27	20	17	34	1.95
20585--20682	29	3.3	29	71	10	90	29	22	14	33	1.93
20532--20718	31	6.2	30	72	13	134	28	19	17	34	1.95
22600--22677	29	2.7	29	78	9	79	26	20	12	39	1.89
22622--22678	29	2.0	29	86	3	80	22	17	15	43	1.87
27430--27459	7	4.3	7	91	0	51	26	46	13	13	1.80
27533--27612	40	2.0	40	100	0	160	22	17	12	47	1.81
39702--39735	13	2.5	14	95	4	61	0	20	0	79	0.73
39702--39735	14	2.5	13	86	9	50	0	20	0	79	0.73
50331--50385	7	7.9	7	95	0	83	36	58	0	5	1.21
59835--59899	27	2.7	22	76	19	67	13	26	3	56	1.52
72342--72382	20	2.1	20	90	4	66	48	9	17	24	1.76
72890--73036	73	2.0	72	96	1	267	40	15	13	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77170--77195	11	2.4	11	100	0	52	0	7	0	92	0.39
100455--100485	4	7.8	4	100	0	62	0	25	0	74	0.82
103426--103452	6	4.5	6	100	0	54	18	18	62	0	1.32
110080--110160	33	2.5	32	82	9	101	18	43	27	11	1.84
115599--115704	2	53.5	2	74	9	83	0	41	4	52	1.28
132570--132659	47	2.0	47	82	12	116	62	5	5	26	1.40
132782--132835	17	2.9	18	79	12	56	25	3	5	64	1.32
132937--132979	21	2.1	20	86	4	59	51	4	0	44	1.22
133539--134380	323	2.6	320	82	5	906	33	14	17	34	1.91
133539--134380	322	2.6	319	81	6	881	33	14	17	34	1.91
134672--136718	321	6.4	321	87	3	2763	35	17	14	32	1.91
136735--137938	324	3.7	322	83	4	1517	35	18	14	31	1.91

Tables:   1

The End!