genome.fa.s10840.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010840.1 Corchorus capsularis cultivar CVL-1 contig10861, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  342011

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8--3960	323	12.2	322	81	7	4301	34	17	14	33	1.90
8--3955	967	4.1	954	83	7	4759	34	17	14	33	1.90
6365--6394	3	10.0	3	100	0	60	0	0	66	33	0.92
7414--7442	2	14.5	2	100	0	58	48	0	0	51	1.00
8574--8613	18	2.2	18	95	0	71	42	15	17	25	1.88
13052--13080	14	2.0	15	93	6	51	41	20	10	27	1.85
26148--26183	17	2.1	17	100	0	72	27	5	5	61	1.41
29552--29591	18	2.2	19	86	13	57	40	2	50	7	1.44
44907--44931	6	4.2	6	100	0	50	68	16	0	16	1.22
52692--52767	40	1.9	40	81	10	93	51	5	5	38	1.47
56538--56660	61	2.0	62	88	1	185	22	30	26	20	1.98
58779--58805	13	2.1	13	100	0	54	29	22	33	14	1.94
58936--59081	41	3.8	38	85	10	174	23	11	6	58	1.57
58994--59053	12	4.9	12	70	9	50	26	11	6	55	1.60
59134--59173	19	2.0	20	85	4	55	77	0	22	0	0.77
61397--61511	41	2.8	41	100	0	230	36	22	9	31	1.86
63433--63472	1	40.0	1	100	0	80	0	0	0	100	0.00
69090--69123	7	4.9	7	100	0	68	29	14	0	55	1.40
83133--83173	19	2.1	20	90	4	66	26	26	0	46	1.53
95913--95939	2	13.5	2	100	0	54	48	0	0	51	1.00
99618--99695	39	2.0	39	100	0	156	46	7	23	23	1.78
102536--102595	30	2.0	30	100	0	120	23	3	13	60	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118488--118514	12	2.2	12	100	0	54	37	7	18	37	1.79
125310--125379	27	2.6	27	97	0	131	20	20	8	51	1.73
134316--134341	13	2.0	13	100	0	52	30	0	0	69	0.89
148373--148430	30	1.9	30	100	0	116	27	15	29	27	1.96
149162--149220	29	2.1	28	84	9	75	40	23	11	23	1.88
154823--155009	50	3.7	50	93	2	322	39	14	22	22	1.92
155554--155880	162	2.0	162	100	0	654	25	15	18	40	1.90
157574--159366	323	5.7	323	84	6	2128	32	15	17	34	1.91
159364--163068	647	5.7	643	85	3	4744	32	15	16	35	1.90
159364--163068	324	11.5	323	86	3	4803	32	15	16	35	1.90
165251--165657	40	10.2	40	92	2	590	33	25	5	35	1.80
165251--165657	79	5.1	78	90	4	591	33	25	5	35	1.80
165251--165658	119	3.4	117	89	5	604	33	25	5	35	1.80
170140--170182	22	2.0	21	86	4	59	62	4	23	9	1.44
178171--178309	33	4.2	33	83	5	167	11	35	34	17	1.86
178387--178503	33	3.6	32	87	5	162	13	29	39	17	1.88
189829--189864	10	3.7	10	92	3	56	91	0	8	0	0.41
189829--189864	13	2.8	13	91	4	56	91	0	8	0	0.41
208461--208501	11	3.8	11	87	3	57	87	0	12	0	0.53
208461--208497	18	2.2	16	90	9	56	89	0	10	0	0.49
208461--208506	22	2.1	22	87	0	65	84	2	13	0	0.71
227175--227209	4	8.8	4	93	0	61	25	45	0	28	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230827--230861	3	11.7	3	87	0	52	31	37	0	31	1.58
235032--235076	3	14.7	3	82	13	56	31	2	2	64	1.18
235032--235070	16	2.5	15	91	4	60	30	2	2	64	1.21
275707--275744	19	2.0	19	100	0	76	26	15	26	31	1.96
276779--276842	32	2.0	32	90	3	103	28	4	25	42	1.75
283256--283306	24	2.1	24	88	0	75	17	29	19	33	1.95
285052--285078	6	4.5	6	100	0	54	0	33	0	66	0.92
286231--286590	102	3.5	102	89	2	526	34	18	26	20	1.95
291223--291318	49	2.0	49	93	0	165	37	12	31	18	1.88
292020--292201	91	2.0	91	98	0	355	29	31	1	37	1.65
292041--292182	45	3.1	45	63	23	116	31	31	0	35	1.63
292293--292370	40	2.0	40	97	0	147	38	3	14	43	1.63
309151--309186	17	2.1	17	100	0	72	41	25	0	33	1.55
325784--325813	2	15.0	2	100	0	60	50	0	0	50	1.00
334782--336333	321	4.8	320	83	6	1679	36	17	14	32	1.90
334782--336333	322	4.8	321	83	6	1683	36	17	14	32	1.90
334806--336333	643	2.4	641	83	5	1810	36	17	14	32	1.90
336261--336403	72	2.0	72	91	0	232	32	15	23	27	1.95
337055--337099	23	2.0	23	86	0	63	46	15	15	22	1.83
336333--337688	325	4.2	315	77	11	1104	36	16	15	31	1.90
337093--337686	316	1.9	321	84	6	819	36	16	13	32	1.89
337384--338236	285	3.0	283	80	9	916	37	17	13	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337948--339635	323	5.2	320	84	4	1910	35	17	15	32	1.91
339381--339927	272	2.0	273	83	5	687	36	17	15	31	1.91
339653--340320	322	2.1	317	81	5	742	36	17	13	32	1.89
339855--340862	516	1.9	512	82	4	1187	37	17	12	32	1.88
340348--342011	322	5.2	319	84	5	2197	36	17	14	31	1.90
340348--342011	645	2.6	643	87	3	2327	36	17	14	31	1.90

Tables:   1

The End!