Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010845.1 Corchorus capsularis cultivar CVL-1 contig10866, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68056

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1920--1991
33
2.3
31
83
7
83
30
19
36
13
1.91
2560--2591
8
3.9
8
92
8
55
84
0
15
0
0.63
3107--3133
2
13.5
2
100
0
54
51
0
0
48
1.00
5364--5392
14
2.0
15
93
6
51
27
10
20
41
1.85
6940--7000
30
2.0
30
90
0
95
0
13
26
60
1.33
8621--10028
333
4.2
333
90
2
2075
35
17
14
32
1.90
8618--10040
665
2.1
666
88
2
2143
35
17
14
32
1.90
14044--14105
20
3.2
20
73
17
76
53
14
4
27
1.61
14037--14115
38
2.1
38
100
0
158
51
15
5
27
1.64
21338--21397
16
3.8
16
70
16
61
56
3
8
31
1.45
21591--21617
5
5.4
5
100
0
54
40
0
0
59
0.98
22383--22415
2
17.0
2
93
6
59
51
0
0
48
1.00
37623--37733
54
2.0
57
91
5
183
38
17
9
35
1.81
58398--58446
23
2.1
23
88
0
71
63
12
4
20
1.45
59292--59332
20
2.0
22
90
9
68
14
31
0
53
1.41
62774--62835
32
1.9
32
86
0
88
51
17
4
25
1.65
62798--62846
22
2.2
21
79
10
53
53
18
6
22
1.66
62967--62998
11
2.9
11
95
0
55
43
9
3
43
1.52
65211--65244
3
11.0
3
93
6
59
32
0
32
35
1.58

Tables:   1

The End!