Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010851.1 Corchorus capsularis cultivar CVL-1 contig10872, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24945

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
282--361
27
3.0
27
96
0
142
23
25
31
20
1.98
399--428
9
3.3
9
100
0
60
10
43
0
46
1.37
399--439
18
2.3
18
87
8
57
14
41
0
43
1.45
456--705
42
6.0
42
75
17
250
8
43
20
27
1.81
430--599
84
2.0
84
97
0
322
10
44
19
26
1.82
456--702
126
2.0
126
99
0
485
8
43
19
27
1.81
450--727
84
3.3
84
81
12
254
8
43
20
28
1.80
684--757
27
2.7
27
91
0
112
4
41
18
35
1.70
2161--2247
38
2.3
38
97
0
165
54
12
4
28
1.58
3425--3462
1
38.0
1
100
0
76
0
0
0
100
0.00
5435--5763
164
2.0
164
100
0
658
29
20
17
32
1.95
7694--7729
2
18.5
2
88
5
56
50
0
0
50
1.00
11909--11948
15
2.6
16
84
11
57
20
37
22
20
1.94
12015--12079
15
4.8
14
70
18
57
15
38
12
33
1.85
12015--12102
39
2.4
37
88
5
133
17
37
12
32
1.87
15801--15877
24
3.2
24
71
10
77
25
7
14
51
1.68
22700--22739
20
2.0
20
100
0
80
35
10
5
50
1.58

Tables:   1

The End!