Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010853.1 Corchorus capsularis cultivar CVL-1 contig10874, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  145674

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
936--973
20
1.9
20
88
0
58
44
7
0
47
1.32
16737--16821
24
3.4
24
85
9
125
28
5
37
28
1.80
19869--19914
21
2.2
21
96
0
83
34
23
17
23
1.96
19869--19927
21
2.8
21
89
0
73
28
25
22
23
1.99
21585--21623
20
2.1
18
85
9
51
48
5
15
30
1.66
28246--28316
33
2.2
33
97
0
133
26
7
15
50
1.69
28963--29022
31
2.0
31
84
9
81
33
15
11
40
1.83
34601--34678
30
2.6
30
79
6
95
29
12
21
35
1.91
35704--35743
13
2.9
13
92
7
62
15
17
7
60
1.57
35703--35743
14
2.9
14
85
10
57
14
17
7
60
1.55
35973--36023
26
2.0
26
88
7
77
13
7
29
49
1.70
38187--38249
29
2.1
29
85
2
81
42
12
25
19
1.86
39343--39570
113
2.0
113
90
0
357
19
15
17
46
1.84
42937--43620
228
3.0
230
80
1
687
20
23
27
28
1.99
44798--44833
3
11.7
3
88
5
54
66
0
2
30
1.06
47063--47089
2
13.5
2
100
0
54
51
0
0
48
1.00
47621--48304
228
3.0
228
83
1
823
20
25
27
27
1.99
53484--54066
228
2.6
228
85
0
761
19
24
26
28
1.98
56599--56639
2
21.5
2
90
9
68
51
0
0
48
1.00
61006--61050
2
23.0
2
86
4
65
48
2
2
46
1.26
62931--62970
12
3.3
12
89
0
62
12
12
67
7
1.41
62931--62970
6
6.7
6
85
0
53
12
12
67
7
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64530--64559
2
15.0
2
100
0
60
50
0
0
50
1.00
70329--70423
31
3.1
31
82
0
109
21
21
23
34
1.97
89797--89861
31
2.1
31
88
0
94
10
20
30
38
1.86
93540--93569
2
15.0
2
92
0
51
50
0
3
46
1.18
100563--100623
21
2.8
22
87
2
88
37
9
13
39
1.77
100682--100723
22
1.9
22
95
0
75
38
14
14
33
1.86
100586--100774
101
1.9
99
88
2
288
36
15
11
36
1.84
114311--114380
31
2.3
30
82
5
77
32
18
10
38
1.84
137118--137215
50
2.0
47
94
5
169
34
9
17
38
1.81
139261--145674
654
9.8
653
86
7
7528
35
17
13
33
1.89
142965--145674
332
8.3
328
78
10
2794
36
16
13
33
1.88

Tables:   1

The End!