Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010856.1 Corchorus capsularis cultivar CVL-1 contig10877, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13761
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:147 original size:24 final size:24

Alignment explanation


    Indices: 72--140  Score: 86
    Period size: 24  Copynumber: 2.9  Consensus size: 24

         62 GATGATCCAC

                    **              
         72 ATGATGCTATTTTAGATGCTGTTA
          1 ATGATGCTGGTTTAGATGCTGTTA

                  *            *     
         96 ATGATGTTGGTTT-GAATGATGTTA
          1 ATGATGCTGGTTTAG-ATGCTGTTA

                                 
        120 ATGATGCTGGTTTAGATGCTG
          1 ATGATGCTGGTTTAGATGCTG

        141 AAAATGAGCC


Statistics
Matches: 37,  Mismatches: 6, Indels: 4
        0.79            0.13        0.09

Matches are distributed among these distances:
  23    1  0.03
  24   35  0.95
  25    1  0.03

ACGTcount: A:0.23, C:0.06, G:0.28, T:0.43


Consensus pattern (24 bp):   
ATGATGCTGGTTTAGATGCTGTTA

Found at i:2590 original size:21 final size:21

Alignment explanation


    Indices: 2566--2606  Score: 73
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2556 ACAGCTGAAA

                                 
       2566 CAAACCCTACAAACATGCCAG
          1 CAAACCCTACAAACATGCCAG

                    *           
       2587 CAAACCCTCCAAACATGCCA
          1 CAAACCCTACAAACATGCCA

       2607 ACAGACCTGC


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.41, C:0.41, G:0.07, T:0.10


Consensus pattern (21 bp):   
CAAACCCTACAAACATGCCAG
Done.