Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010861.1 Corchorus capsularis cultivar CVL-1 contig10882, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135095

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
644--735
46
2.0
46
100
0
184
19
23
28
28
1.98
2326--2354
5
5.8
5
100
0
58
0
17
0
82
0.66
15069--15207
75
1.9
75
90
0
224
15
20
29
33
1.94
24791--24822
16
2.0
16
100
0
64
37
37
0
25
1.56
28617--28646
14
2.1
15
93
6
53
86
0
13
0
0.57
34241--34356
54
2.1
54
91
0
187
31
25
7
34
1.85
40943--40987
21
2.2
21
84
7
58
37
20
11
31
1.87
40951--40993
20
2.2
20
83
8
52
27
20
9
41
1.83
43597--43630
17
2.0
17
88
11
52
47
11
20
20
1.81
46171--46274
52
2.0
52
100
0
208
46
17
9
26
1.79
67783--68124
183
1.9
183
91
1
560
35
23
25
16
1.95
80398--80436
18
2.2
18
90
0
60
48
25
0
25
1.51
93844--93870
2
13.5
2
100
0
54
51
0
0
48
1.00
95413--95446
17
2.1
17
88
5
52
14
11
0
73
1.10
118788--118823
17
2.2
16
90
5
54
61
0
2
36
1.11
133320--133360
21
2.0
21
95
0
73
9
7
41
41
1.66

Tables:   1

The End!