genome.fa.s10865.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010865.1 Corchorus capsularis cultivar CVL-1 contig10886, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106981

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340--365	2	13.0	2	100	0	52	0	0	50	50	1.00
369--1624	323	3.9	323	87	2	1686	33	16	14	35	1.89
369--1704	322	4.1	322	85	3	1600	33	15	14	35	1.89
1968--2011	14	3.0	15	83	12	56	54	0	0	45	0.99
2123--2174	26	2.0	27	88	3	79	65	3	3	26	1.27
8591--8637	24	2.0	24	84	8	62	48	2	2	46	1.25
22784--22810	7	3.9	7	100	0	54	44	14	11	29	1.80
28703--28743	6	6.8	6	97	0	64	56	34	0	9	1.32
32673--32697	7	3.6	7	100	0	50	28	0	0	72	0.86
32877--33033	64	2.5	64	83	3	192	41	7	9	42	1.64
36059--36228	89	1.9	89	93	0	295	34	25	10	29	1.90
38501--38631	61	2.2	60	85	8	169	56	13	7	22	1.62
40733--40788	29	1.9	29	88	0	85	25	21	14	39	1.91
41480--41559	28	2.8	28	82	5	97	40	13	21	25	1.90
42330--42466	72	1.9	72	96	0	256	33	18	8	38	1.82
42503--42722	70	3.1	71	88	3	291	37	11	0	50	1.43
42522--42745	74	3.1	73	89	5	312	38	11	0	49	1.42
43440--43670	78	3.1	76	88	7	314	37	12	0	49	1.44
43440--43670	70	3.2	70	82	10	293	37	12	0	49	1.44
42408--44254	924	2.0	930	94	2	3225	34	10	10	43	1.74
48913--48980	30	2.2	30	87	7	93	20	16	4	58	1.54
57534--57565	6	5.3	6	96	0	55	3	18	31	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61091--61191	51	2.0	51	88	0	148	33	15	14	35	1.89
62018--62078	31	2.0	31	87	6	88	31	16	4	47	1.68
68494--68558	32	2.0	32	100	0	130	36	18	20	24	1.94
69415--69441	6	4.5	6	100	0	54	14	0	70	14	1.17
78488--78523	2	18.0	2	100	0	72	50	0	0	50	1.00
81849--81926	29	2.7	28	75	15	86	17	14	28	39	1.89
103827--104101	109	2.5	109	91	4	428	37	10	1	49	1.49
106951--106981	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1

The End!