genome.fa.s10869.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010869.1 Corchorus capsularis cultivar CVL-1 contig10890, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  337752

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12467--12512	2	23.5	2	85	12	60	52	2	0	45	1.13
13895--13934	20	2.0	20	100	0	80	35	15	20	30	1.93
18720--18744	1	25.0	1	100	0	50	100	0	0	0	0.00
25372--25401	2	15.0	2	100	0	60	50	0	0	50	1.00
33915--33953	6	6.5	6	81	0	51	2	2	30	64	1.21
46956--47013	30	1.9	30	89	0	89	50	15	3	31	1.61
54110--54135	7	3.7	7	100	0	52	88	0	0	11	0.52
62966--63042	6	12.0	6	94	5	109	0	0	15	84	0.62
62968--63042	1	75.0	1	70	0	51	0	0	14	85	0.60
62968--63042	7	11.4	7	95	4	115	0	0	14	85	0.60
62968--63042	20	3.8	19	93	6	116	0	0	14	85	0.60
63573--63715	33	4.2	33	76	9	135	24	20	16	38	1.93
63635--63706	37	2.0	36	88	2	108	20	22	19	37	1.94
63769--66022	32	79.9	25	74	17	909	28	15	23	32	1.95
64233--66022	32	60.7	32	80	12	1783	28	16	23	32	1.96
64233--66022	58	30.4	59	82	10	1462	28	16	23	32	1.96
63844--66031	90	25.4	89	79	14	1510	28	16	22	32	1.96
65923--66031	26	4.2	26	93	0	191	28	19	21	31	1.97
66369--68275	333	5.8	333	86	3	2441	33	15	14	36	1.88
66369--68275	665	2.9	658	86	4	2495	33	15	14	36	1.88
66306--68275	998	2.0	991	88	4	2914	32	15	14	36	1.88
68280--69558	333	3.8	334	82	3	1382	32	15	14	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69480--69640	79	2.0	79	96	0	295	32	11	12	43	1.78
69563--70302	333	2.2	330	85	3	995	32	14	14	37	1.87
99430--99556	66	1.9	66	91	3	211	15	33	22	29	1.95
108762--108808	20	2.3	20	81	0	58	48	17	0	34	1.47
108959--109032	20	3.0	26	70	27	70	22	6	18	51	1.70
119182--119309	54	2.4	54	98	0	247	28	28	20	23	1.99
119218--119330	54	2.1	54	81	0	127	28	33	17	20	1.95
119997--120036	20	2.0	20	95	0	71	27	20	5	47	1.70
122402--122530	31	4.5	31	75	16	150	32	28	23	15	1.95
130749--130785	3	12.0	3	88	5	56	32	32	0	35	1.58
132876--133069	108	1.8	106	91	4	318	39	15	13	31	1.86
139829--139895	35	1.9	35	96	0	125	46	19	7	26	1.76
147912--147968	28	2.0	29	93	3	98	36	21	8	33	1.84
154374--154656	147	2.0	141	88	4	413	29	21	20	28	1.98
163846--163945	42	2.4	42	98	1	193	12	16	14	58	1.64
169790--169814	2	12.5	2	100	0	50	52	0	0	48	1.00
175555--175579	1	25.0	1	100	0	50	100	0	0	0	0.00
181364--181390	12	2.2	12	100	0	54	44	7	0	48	1.31
181529--181569	11	3.7	11	87	12	57	56	2	0	41	1.13
185747--185900	77	2.0	77	96	0	281	29	12	23	35	1.91
196376--196443	34	2.0	34	100	0	136	26	11	32	29	1.92
200463--200487	3	8.3	3	100	0	50	68	0	32	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227794--227821	2	14.0	2	100	0	56	50	0	0	50	1.00
235309--235346	17	2.2	17	86	9	51	42	10	5	42	1.62
239016--239059	23	1.9	23	90	0	70	36	11	11	40	1.77
245839--245943	30	3.6	27	74	16	68	40	7	12	40	1.71
247497--247625	59	2.2	60	85	1	170	29	12	20	37	1.89
247529--247653	59	2.1	59	83	2	153	32	16	16	36	1.90
249472--249515	23	1.9	23	90	0	70	36	11	11	40	1.77
255797--255924	64	1.9	64	86	10	177	32	3	25	38	1.74
292116--296225	334	12.4	333	86	3	5678	35	18	14	31	1.91
292116--296225	667	6.2	668	87	2	5732	35	18	14	31	1.91
296350--296381	16	2.0	16	100	0	64	37	31	6	25	1.81
301781--301850	32	2.2	31	87	7	97	25	15	12	45	1.82
302292--302356	31	2.1	32	97	2	123	27	15	12	44	1.82
302300--302383	27	3.0	27	85	7	87	28	15	16	39	1.89
303329--303405	28	2.8	28	80	4	93	29	25	12	31	1.93
303706--303799	39	2.4	40	87	5	129	26	17	13	42	1.86
304276--304311	18	2.0	18	94	0	63	86	13	0	0	0.58
304276--304312	14	2.6	15	87	8	51	86	13	0	0	0.57
305463--305576	20	5.4	20	70	10	84	29	25	6	38	1.80
305467--305793	43	7.7	42	88	4	403	28	26	7	37	1.83
305467--305793	127	2.6	127	87	6	441	28	26	7	37	1.83
305671--305781	19	5.4	19	66	15	69	29	27	5	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305467--305793	171	1.9	170	87	4	480	28	26	7	37	1.83
305855--306097	122	2.0	122	90	1	380	44	20	20	14	1.86
314152--314181	15	2.0	15	100	0	60	46	13	26	13	1.80
331936--331969	17	2.0	17	100	0	68	41	23	17	17	1.90
336445--336487	15	2.9	14	83	13	50	2	4	44	48	1.36

Tables:   1

The End!