Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010872.1 Corchorus capsularis cultivar CVL-1 contig10893, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57437

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1379
315
4.3
320
88
4
1961
35
16
15
32
1.90
1343--1417
38
2.0
38
83
0
96
37
9
18
34
1.83
1445--2521
322
3.4
322
76
11
936
34
16
15
33
1.90
3965--4006
22
1.9
22
90
0
66
45
11
14
28
1.80
4143--4257
22
5.2
22
86
4
151
35
12
22
29
1.91
11921--11962
22
1.9
22
95
0
75
21
16
23
38
1.93
21725--21794
29
2.4
29
85
2
86
38
28
12
20
1.89
24121--24149
15
1.9
15
100
0
58
58
13
6
20
1.58
44075--44099
9
2.8
9
100
0
50
56
20
12
12
1.67
48784--48875
21
4.2
21
76
10
87
3
45
28
22
1.68
48801--48872
24
3.1
23
75
18
78
4
45
25
25
1.71
48787--48872
45
1.9
45
85
4
120
3
44
27
24
1.70
48850--48907
30
1.9
30
93
6
100
5
43
27
24
1.75
54455--55686
324
3.8
324
83
3
1467
34
17
14
32
1.91
55489--55880
205
1.9
206
89
1
608
34
16
15
33
1.91
55155--56214
524
2.0
526
85
3
1420
34
17
14
33
1.90
55687--57437
647
2.7
635
82
6
2017
34
16
14
34
1.89
55695--57437
319
5.5
319
79
7
1817
34
16
14
34
1.90

Tables:   1

The End!