Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010877.1 Corchorus capsularis cultivar CVL-1 contig10898, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70826

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
241--272
6
5.2
6
96
3
55
3
15
0
81
0.82
2606--2645
21
1.9
21
89
0
62
10
52
0
37
1.35
2627--2676
3
16.7
3
87
0
64
0
60
0
40
0.97
2613--2676
21
3.0
21
88
0
83
3
56
0
40
1.15
12426--12570
72
2.0
72
87
2
211
27
13
24
34
1.93
25157--25631
168
2.8
168
96
0
878
26
26
14
33
1.94
29705--29742
11
3.5
11
85
10
51
57
2
0
39
1.12
30419--30443
10
2.5
10
100
0
50
8
12
8
72
1.29
35736--35789
18
2.8
19
77
8
56
14
7
22
55
1.64
36700--36810
38
2.9
38
100
0
222
20
10
15
53
1.72
37900--37925
2
13.0
2
100
0
52
0
0
50
50
1.00
50100--50154
24
2.3
24
84
6
67
41
12
9
36
1.75
53428--53457
6
5.0
6
91
0
51
30
20
50
0
1.49
53963--54008
6
8.0
6
95
4
78
0
17
82
0
0.67
60213--60257
21
2.1
22
83
4
56
2
20
0
77
0.87
60222--60261
11
3.6
12
77
16
50
0
17
0
82
0.67
60222--60261
16
2.4
17
84
16
57
0
17
0
82
0.67
63091--63116
12
2.2
12
100
0
52
34
15
0
50
1.45

Tables:   1

The End!