Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001088.1 Corchorus capsularis cultivar CVL-1 contig01088, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2258
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31


Found at i:1580 original size:70 final size:70

Alignment explanation


    Indices: 1467--1610  Score: 288
    Period size: 70  Copynumber: 2.1  Consensus size: 70

       1457 AAATCCTATC

                                                                             
       1467 CTAATAATATCTCAAATTTGGGAACTTACCCTTTATACAGGATTTATTTTAAAATGGGCTAAAAC
          1 CTAATAATATCTCAAATTTGGGAACTTACCCTTTATACAGGATTTATTTTAAAATGGGCTAAAAC

                 
       1532 TTAGG
         66 TTAGG

                                                                             
       1537 CTAATAATATCTCAAATTTGGGAACTTACCCTTTATACAGGATTTATTTTAAAATGGGCTAAAAC
          1 CTAATAATATCTCAAATTTGGGAACTTACCCTTTATACAGGATTTATTTTAAAATGGGCTAAAAC

                 
       1602 TTAGG
         66 TTAGG

                
       1607 CTAA
          1 CTAA

       1611 AGTCGTGCCT


Statistics
Matches: 74,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  70   74  1.00

ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35


Consensus pattern (70 bp):   
CTAATAATATCTCAAATTTGGGAACTTACCCTTTATACAGGATTTATTTTAAAATGGGCTAAAAC
TTAGG
Done.