Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010882.1 Corchorus capsularis cultivar CVL-1 contig10903, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20270
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:17867 original size:15 final size:16

Alignment explanation


    Indices: 17835--17867  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

      17825 TTTTTTTCCC

                         *  
      17835 TTTTGTAGTATTTCTT
          1 TTTTGTAGTATTTATT

                            
      17851 TTTTGTAGTA-TTATT
          1 TTTTGTAGTATTTATT

              
      17866 TT
          1 TT

      17868 AGTTTTCCTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  15    6  0.38
  16   10  0.62

ACGTcount: A:0.15, C:0.03, G:0.12, T:0.70


Consensus pattern (16 bp):   
TTTTGTAGTATTTATT
Done.