Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010883.1 Corchorus capsularis cultivar CVL-1 contig10904, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  214122

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--93
2
46.0
2
97
2
177
1
49
0
49
1.07
15506--15535
13
2.2
13
94
5
51
13
0
6
80
0.91
16229--16256
2
14.0
2
100
0
56
50
0
0
50
1.00
17268--17326
29
2.0
30
90
3
93
20
28
8
42
1.81
18385--18450
35
2.0
33
88
11
100
46
13
0
39
1.43
18569--18608
17
2.4
17
87
8
55
30
17
20
32
1.95
22834--22868
12
2.9
12
86
0
52
11
8
0
80
0.92
53023--53162
48
2.8
51
88
8
207
31
27
12
28
1.93
53481--53604
53
2.3
53
87
0
176
31
25
14
29
1.95
67569--67614
24
1.9
24
82
8
58
45
28
6
19
1.75
68299--68331
7
4.9
7
96
3
59
72
0
27
0
0.85
75615--75658
1
44.0
1
100
0
88
100
0
0
0
0.00
75904--75935
3
10.7
3
93
0
55
65
0
34
0
0.93
84436--84473
20
2.0
20
89
5
60
63
23
13
0
1.30
85140--85225
13
6.2
13
72
19
75
63
6
12
16
1.49
88895--88927
4
8.2
4
93
0
57
0
3
24
72
0.98
89690--89794
49
2.1
49
98
0
201
28
11
14
45
1.79
104476--104503
2
14.0
2
100
0
56
50
0
0
50
1.00
120437--120918
156
3.1
154
78
7
458
45
12
12
29
1.79
121366--121944
155
3.7
158
76
6
496
45
12
11
30
1.77
126586--126621
2
19.0
2
88
11
58
50
0
0
50
1.00
128011--128039
1
29.0
1
100
0
58
100
0
0
0
0.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
128617--128669
27
2.0
27
92
0
88
56
5
20
16
1.60
130077--130194
63
1.9
62
85
1
164
16
19
25
38
1.92
130046--130203
31
5.1
31
82
1
154
17
20
24
37
1.94
131149--131182
1
34.0
1
93
0
59
97
2
0
0
0.19
131145--131182
14
2.8
14
96
4
69
94
5
0
0
0.30
142859--142903
22
2.0
22
100
0
90
40
22
13
24
1.90
143240--145394
272
7.9
271
84
2
2629
30
19
19
31
1.96
164793--164822
2
15.0
2
100
0
60
50
0
0
50
1.00
167173--167274
54
2.0
50
88
7
150
36
19
21
22
1.95
172693--172803
37
2.9
37
88
8
161
34
12
19
33
1.90
174153--174194
18
2.4
18
77
18
52
21
71
0
7
1.09
174273--174398
48
2.6
48
83
5
173
30
46
11
11
1.74
174289--174403
24
4.8
24
74
8
81
32
47
11
8
1.70
174288--174349
12
5.2
12
69
7
54
37
46
12
3
1.58
190878--190916
1
39.0
1
100
0
78
0
0
0
100
0.00
197017--197057
19
2.2
19
91
4
66
82
0
17
0
0.66
201551--201598
20
2.3
20
85
3
60
27
10
25
37
1.88
202362--202419
30
1.9
30
93
6
100
24
22
6
46
1.76
211119--211157
2
19.5
2
100
0
78
48
0
0
51
1.00
212712--213725
440
2.3
435
83
3
1232
31
14
12
41
1.83

Tables:   1

The End!