Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010884.1 Corchorus capsularis cultivar CVL-1 contig10905, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117497

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--1993
643
3.1
640
88
3
3011
35
17
14
32
1.89
2--1993
321
6.2
320
88
3
2914
35
17
14
32
1.89
2--1994
964
2.1
962
89
3
3028
35
17
14
32
1.89
1734--2250
257
2.0
257
93
0
885
37
18
15
28
1.92
1991--8044
321
18.9
318
82
6
6503
36
16
14
32
1.88
1991--8044
641
9.5
637
85
5
7116
36
16
14
32
1.88
9803--10054
40
6.2
41
89
4
341
31
26
7
34
1.83
9827--10056
20
11.3
20
63
8
97
30
26
7
34
1.85
9803--10054
81
3.1
80
88
2
360
31
26
7
34
1.83
10722--10746
12
2.1
12
100
0
50
60
0
0
40
0.97
22741--22885
31
5.0
31
78
14
155
17
20
26
35
1.95
23887--23938
21
2.5
21
87
0
68
5
7
32
53
1.53
28293--28416
63
2.0
63
96
0
230
23
23
21
31
1.98
29666--29695
6
5.0
6
95
0
51
0
20
33
46
1.51
42109--42155
2
22.5
2
91
4
67
48
2
4
44
1.34
44037--44069
2
16.5
2
93
0
57
51
0
3
45
1.16
44935--44959
13
1.9
13
100
0
50
0
8
0
92
0.40
46722--46755
16
2.1
16
88
0
50
50
5
5
38
1.51
54783--54820
11
3.5
11
89
10
51
39
0
2
57
1.12
59767--59800
2
17.5
2
93
6
61
50
0
0
50
1.00
71002--71045
19
2.3
19
84
7
54
54
13
2
29
1.51
71144--71180
17
2.2
17
100
0
74
37
10
0
51
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76493--76527
17
2.1
17
88
0
52
25
8
31
34
1.86
82227--82267
21
2.0
21
85
9
57
39
21
34
4
1.75
97917--97941
3
8.3
3
100
0
50
32
36
0
32
1.58
101490--101520
2
15.5
2
100
0
62
51
0
0
48
1.00
107473--107529
19
2.6
21
73
21
55
35
8
3
52
1.50
116844--116902
30
1.9
31
93
3
102
11
15
16
55
1.68

Tables:   1

The End!