Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010885.1 Corchorus capsularis cultivar CVL-1 contig10906, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89961

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15738--15773
17
2.1
17
90
10
56
0
13
2
83
0.76
15738--15773
16
2.2
17
90
5
56
0
13
2
83
0.76
18852--19046
105
1.9
103
79
8
223
40
11
9
39
1.73
21314--21383
32
2.1
35
89
7
110
47
2
20
30
1.64
21783--21810
3
9.3
3
100
0
56
32
0
67
0
0.91
21844--21930
33
2.6
33
85
0
120
8
25
39
27
1.84
22984--23013
2
15.0
2
100
0
60
50
0
0
50
1.00
35077--35111
11
3.2
11
87
0
52
85
0
11
2
0.69
35968--35993
3
8.7
3
100
0
52
0
0
65
34
0.93
38415--38450
8
4.5
8
100
0
72
55
0
44
0
0.99
52064--52099
2
18.0
2
100
0
72
50
0
0
50
1.00
54816--54851
17
2.1
17
94
0
63
86
0
11
2
0.68
55119--55157
15
2.6
16
84
12
55
64
0
35
0
0.94
59670--59710
15
2.7
15
92
0
64
43
0
39
17
1.49
62575--62604
2
15.0
2
100
0
60
50
50
0
0
1.00
65229--65266
19
2.0
19
100
0
76
26
10
15
47
1.78
66102--66170
36
1.9
35
97
2
129
60
13
8
17
1.56
78394--78447
21
2.6
21
96
0
99
46
14
11
27
1.79
82497--82930
217
2.0
216
93
3
739
10
21
20
47
1.80
82960--83226
146
1.8
143
95
2
489
19
23
21
35
1.96
83201--83378
86
2.1
86
90
1
277
8
28
29
32
1.88
83398--83446
17
2.9
17
87
3
73
30
16
34
18
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84497--84523
1
27.0
1
100
0
54
0
0
0
100
0.00
84748--86156
334
4.2
334
93
1
2364
34
17
16
31
1.93
84748--86156
667
2.1
665
93
1
2326
34
17
16
31
1.93
86012--86299
143
2.0
143
89
2
436
33
19
19
27
1.96
85679--86633
477
2.0
476
93
1
1655
33
18
17
30
1.94
86155--89905
334
11.3
333
91
2
5598
34
17
16
31
1.92
85345--86967
811
2.0
810
94
0
2845
34
18
16
30
1.93
86155--89905
667
5.6
666
89
2
5613
34
17
16
31
1.92

Tables:   1

The End!