genome.fa.s10886.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010886.1 Corchorus capsularis cultivar CVL-1 contig10907, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  190571

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--684	332	2.0	337	90	2	1083	36	16	14	32	1.89
386--1316	300	3.0	299	78	11	1026	35	17	15	31	1.91
106--1316	632	1.9	631	86	2	1741	35	17	15	31	1.91
869--2300	476	3.0	475	91	1	2321	34	17	17	30	1.93
1819--3269	333	4.4	332	90	2	2223	35	17	16	30	1.92
2969--3569	300	2.0	300	91	1	981	34	16	16	31	1.92
3620--4034	214	1.9	214	93	0	704	35	16	13	34	1.88
3868--6206	334	7.0	332	87	3	3300	35	17	15	32	1.91
3834--6205	1000	2.4	998	88	4	3521	35	17	15	32	1.91
15416--15451	17	2.2	16	90	5	54	47	0	5	47	1.25
28109--28135	2	13.5	2	100	0	54	51	0	0	48	1.00
30169--30232	27	2.3	27	94	2	110	56	7	26	9	1.58
66549--66575	2	13.5	2	100	0	54	48	0	0	51	1.00
72037--72079	22	2.0	21	91	8	70	53	0	0	46	1.00
79395--79442	17	3.0	15	80	14	60	68	10	4	16	1.33
79395--79444	16	3.1	16	80	5	64	68	10	4	18	1.34
85631--86138	254	2.0	254	100	0	1016	31	14	17	36	1.89
112038--112326	73	3.8	73	86	5	355	27	28	10	33	1.90
119017--119076	3	19.7	3	93	3	57	56	0	10	33	1.32
126353--126398	23	2.0	23	100	0	92	34	4	8	52	1.52
138789--138837	15	3.1	16	72	27	50	61	14	6	18	1.53
145173--145342	94	1.8	92	92	5	288	26	13	18	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150070--150095	2	13.0	2	100	0	52	50	0	0	50	1.00
160711--160755	12	3.8	12	93	0	81	20	0	62	17	1.33
160711--160758	24	2.0	24	100	0	96	20	0	62	16	1.33
160712--160771	24	2.5	24	89	5	86	20	1	65	13	1.35
168495--168532	20	1.9	20	94	0	67	39	18	7	34	1.80
168787--168893	44	2.4	44	100	0	214	23	10	19	46	1.80
169347--169397	22	2.2	24	83	16	72	41	0	0	58	0.98
169347--169395	25	2.0	25	84	8	64	40	0	0	59	0.98
173818--174095	22	12.9	21	69	16	140	35	12	18	32	1.89
173818--173875	23	2.7	21	76	10	53	37	12	22	27	1.89
173900--173929	15	2.0	15	100	0	60	40	20	0	40	1.52
173983--174086	41	2.5	42	84	6	138	36	13	18	31	1.89
174483--175107	22	28.8	22	72	8	370	35	14	17	33	1.89
174483--175107	86	7.2	84	72	13	319	35	14	17	33	1.89
174483--175108	64	9.6	64	71	11	375	35	14	17	33	1.89
175302--175369	34	2.0	34	100	0	136	52	11	5	29	1.61
182906--182952	23	2.0	23	88	12	69	17	2	12	68	1.31
183500--183554	28	2.0	28	89	7	85	43	29	9	18	1.80
186948--187001	22	2.5	22	84	0	63	38	3	9	48	1.53
187204--187484	22	12.9	22	65	16	68	37	13	7	41	1.74
187215--187464	22	11.5	21	70	12	132	36	13	8	41	1.75
187234--187340	45	2.4	46	80	3	119	40	13	8	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187307--187380	39	1.9	38	86	2	103	36	9	6	47	1.63
187625--187676	22	2.4	22	80	3	70	36	9	9	44	1.70
187815--187897	38	2.2	38	82	8	107	63	10	12	13	1.52
188023--188085	31	2.0	31	84	6	83	46	4	17	31	1.69

Tables:   1

The End!