Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010888.1 Corchorus capsularis cultivar CVL-1 contig10909, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57421

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20--130
30
3.4
31
74
17
98
12
39
35
12
1.81
38--111
37
2.1
35
85
7
96
10
37
35
16
1.83
117--141
13
1.9
13
100
0
50
24
48
24
4
1.68
192--233
14
2.7
15
82
14
50
54
2
28
14
1.52
5741--5787
24
2.0
24
95
0
85
27
21
29
21
1.98
21591--21880
87
3.4
82
84
6
334
35
14
28
21
1.93
21633--21880
81
3.0
80
83
9
316
34
15
28
22
1.94
29500--29583
30
2.7
31
81
5
107
17
17
26
38
1.92
35858--35931
16
4.7
16
91
1
114
41
40
13
4
1.63
35844--35885
6
6.7
6
80
20
50
35
45
16
2
1.61
52695--52738
6
7.3
6
81
0
52
29
11
56
2
1.46
52699--52750
18
2.9
18
88
0
77
26
11
57
3
1.51
54561--56267
330
5.2
329
88
3
2402
32
15
17
35
1.91
54561--57408
661
4.2
659
78
10
2806
32
14
16
36
1.89
56256--56280
12
2.1
12
100
0
50
60
0
0
40
0.97
56308--57408
331
3.3
330
86
3
1462
33
13
15
36
1.88

Tables:   1

The End!