Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010890.1 Corchorus capsularis cultivar CVL-1 contig10911, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45438

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
374--403
13
2.3
13
100
0
60
43
0
10
46
1.37
2518--2546
2
14.5
2
100
0
58
48
0
0
51
1.00
3022--3094
29
2.5
29
84
8
103
19
30
12
38
1.88
3229--3302
29
2.5
29
86
2
103
33
14
32
18
1.92
5202--5253
26
2.0
26
92
0
86
42
3
21
32
1.71
6411--6436
12
2.2
12
100
0
52
46
7
7
38
1.61
15056--15111
24
2.5
22
78
16
60
42
23
26
7
1.79
16928--16955
2
14.0
2
100
0
56
50
0
0
50
1.00
33508--33561
27
2.0
27
100
0
108
29
3
18
48
1.65
33627--33663
17
2.1
18
90
5
58
24
21
18
35
1.96
34544--34681
69
2.0
69
100
0
276
40
11
18
28
1.86
34945--34971
2
13.5
2
100
0
54
48
0
0
51
1.00
34987--35017
16
2.0
15
93
6
53
35
0
6
58
1.24
37725--37797
32
2.3
31
90
4
110
17
9
34
38
1.83
45402--45436
2
17.5
2
100
0
70
51
0
0
48
1.00

Tables:   1

The End!