Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010891.1 Corchorus capsularis cultivar CVL-1 contig10912, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107657

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
418--466
2
24.0
2
88
12
73
48
4
0
46
1.20
418--466
15
3.3
15
91
5
73
48
4
0
46
1.20
732--761
14
2.2
14
94
5
53
13
16
6
63
1.50
2816--2859
11
3.8
12
82
14
56
77
13
6
2
1.07
6082--6244
31
5.3
31
78
0
137
34
22
23
19
1.96
11882--12009
64
2.0
64
100
0
256
39
10
14
35
1.81
14421--14454
17
2.0
17
94
0
59
23
20
5
50
1.70
15028--15058
2
15.5
2
100
0
62
51
0
0
48
1.00
15958--15990
14
2.4
14
94
0
57
0
60
0
39
0.97
16119--16169
26
2.0
26
88
7
77
11
9
23
54
1.66
16600--16665
31
2.1
31
88
5
98
27
19
4
48
1.68
16934--16991
22
2.6
23
78
5
66
36
5
17
41
1.72
16979--17107
22
5.9
22
89
0
177
34
13
17
34
1.89
17238--17523
22
12.8
22
67
18
78
40
10
14
34
1.80
17375--17611
22
10.7
22
68
17
127
44
9
10
35
1.71
17374--17587
22
9.7
22
73
11
136
43
9
11
35
1.73
17692--17758
19
3.5
19
85
2
89
43
11
20
23
1.85
17749--18226
22
21.7
22
66
16
107
38
9
14
37
1.79
17943--18047
23
4.7
22
76
4
93
36
8
16
39
1.79
17749--18226
44
10.8
44
67
13
169
38
9
14
37
1.79
22000--22216
36
5.4
36
72
24
150
45
11
20
23
1.83
22003--22265
47
6.0
47
82
14
268
45
11
20
22
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22000--22265
83
3.2
83
73
23
268
45
10
21
22
1.82
22169--22265
48
2.0
49
90
6
153
47
10
21
20
1.80
31772--31881
51
2.2
51
89
0
166
20
45
17
17
1.86
40621--40645
2
12.5
2
100
0
50
52
0
48
0
1.00
47906--47931
8
3.2
8
100
0
52
61
11
26
0
1.30
58221--58260
16
2.3
19
83
16
59
55
10
15
20
1.68
61433--61460
14
2.0
14
100
0
56
7
0
14
78
0.95
62436--62919
167
2.9
165
84
4
639
30
15
16
38
1.89
64910--64962
22
2.4
22
81
6
54
79
11
5
3
1.03
69613--69658
23
2.0
23
100
0
92
43
8
4
43
1.55
76346--76544
105
1.9
105
93
0
344
25
23
15
35
1.94
79853--79898
22
2.0
23
83
4
58
41
19
8
30
1.82
87864--87931
29
2.3
29
78
9
77
48
14
13
23
1.79
90467--90500
16
2.1
16
94
0
59
47
2
32
17
1.63
91377--91420
19
2.3
19
88
0
61
34
2
52
11
1.50
98999--99031
16
2.1
16
100
0
66
24
21
48
6
1.72

Tables:   1

The End!