genome.fa.s10896.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010896.1 Corchorus capsularis cultivar CVL-1 contig10917, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  214389

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63--120	11	5.5	11	72	14	50	22	3	1	72	1.09
5165--5198	17	2.0	17	100	0	68	41	5	11	41	1.66
11056--11080	2	12.5	2	100	0	50	52	0	0	48	1.00
13768--13827	24	2.5	24	88	0	93	33	25	18	23	1.97
14016--14060	20	2.2	21	92	4	74	37	13	35	13	1.84
14008--14113	52	2.0	53	92	1	178	33	13	33	20	1.91
14068--14113	21	2.2	21	88	7	67	39	13	32	15	1.85
16189--16245	2	28.5	2	89	0	87	49	1	3	45	1.29
16531--16601	33	2.2	33	92	0	115	46	2	40	9	1.52
16532--16611	33	2.7	27	71	20	70	46	3	41	8	1.53
21701--21733	3	11.0	3	100	0	66	33	0	0	66	0.92
22422--22532	56	2.0	56	91	8	183	27	16	3	53	1.59
22795--22821	12	2.2	12	100	0	54	33	0	0	66	0.92
22852--22922	34	2.1	34	89	0	106	32	11	15	40	1.83
22902--22948	23	2.0	23	100	0	94	31	17	17	34	1.92
23066--23104	15	2.4	17	83	16	64	30	0	28	41	1.57
23069--23101	15	2.2	15	100	0	66	30	0	27	42	1.56
23229--23297	33	2.1	33	91	0	111	47	8	27	15	1.75
23591--23771	61	3.0	61	86	5	267	41	14	17	26	1.88
75417--75468	24	2.1	25	82	10	63	3	55	5	34	1.42
83229--83258	16	1.9	15	93	6	51	70	0	0	30	0.88
84474--84508	15	2.4	14	90	9	61	57	0	42	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90209--90359	75	2.0	75	100	0	302	11	11	26	49	1.74
91217--91241	1	25.0	1	100	0	50	0	0	100	0	0.00
103977--104002	4	6.5	4	100	0	52	76	0	23	0	0.78
109075--109121	23	2.0	23	83	4	58	12	2	25	59	1.45
114907--114946	21	1.9	21	89	0	62	20	67	7	5	1.34
120724--120813	45	2.0	45	82	0	108	34	21	21	23	1.97
120975--121037	33	2.0	31	90	9	101	46	17	22	14	1.84
128467--128495	2	14.5	2	100	0	58	51	0	0	48	1.00
142838--142862	2	12.5	2	100	0	50	48	0	52	0	1.00
159013--159098	16	5.4	16	77	5	93	53	24	12	9	1.68
158992--159115	32	3.8	31	82	8	131	51	25	12	10	1.71
159266--159341	32	2.4	32	82	4	91	38	31	10	19	1.86
159397--159431	13	2.6	14	90	4	54	14	8	31	45	1.75
175024--175065	19	2.2	19	95	0	75	61	11	9	16	1.55
175417--175464	25	1.9	25	82	0	60	62	8	8	20	1.49
184607--184674	24	2.8	24	84	0	91	23	25	19	32	1.97
187049--187074	2	13.0	2	100	0	52	50	0	0	50	1.00
190732--190775	2	22.5	2	95	4	81	52	0	0	47	1.00
209399--209823	50	8.5	50	90	5	628	6	33	27	32	1.82
209399--209789	152	2.6	154	91	4	636	6	34	27	32	1.82
211496--214389	324	9.0	321	86	3	3793	32	15	17	34	1.91
211501--214389	973	3.0	970	89	3	4262	32	15	17	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211496--214365	647	4.4	640	88	4	3873	32	15	17	34	1.91

Tables:   1

The End!