genome.fa.s10898.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010898.1 Corchorus capsularis cultivar CVL-1 contig10919, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  293980

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1108	321	3.4	320	87	1	1628	34	14	16	33	1.90
46557--46591	2	17.5	2	100	0	70	51	0	48	0	1.00
48251--48292	13	3.0	15	89	10	63	0	14	0	85	0.59
48250--48292	5	9.0	5	85	14	56	0	16	0	83	0.64
53525--53554	15	1.9	16	93	6	53	0	26	0	73	0.84
58769--58803	7	5.0	7	100	0	70	42	28	28	0	1.56
69412--69526	57	2.0	56	83	9	144	34	28	12	24	1.91
73715--73851	31	4.5	31	88	0	186	16	22	27	32	1.96
85787--85830	7	6.7	7	89	5	58	2	50	0	47	1.13
85787--85830	12	3.4	13	84	9	63	2	50	0	47	1.13
95791--95820	6	5.0	6	95	0	51	16	36	0	46	1.47
99933--99965	15	2.2	15	100	0	66	33	12	30	24	1.91
106362--106423	31	2.2	27	76	20	72	46	4	14	33	1.66
106372--106438	31	2.2	31	97	0	125	43	7	13	35	1.72
108006--108106	49	2.1	49	100	0	202	28	34	11	24	1.91
126305--126335	1	31.0	1	100	0	62	100	0	0	0	0.00
134239--134267	13	2.2	13	100	0	58	86	6	0	6	0.72
135757--135782	2	13.0	2	100	0	52	50	0	0	50	1.00
138737--138772	18	2.1	18	90	10	58	30	13	8	47	1.73
139363--139394	14	2.1	16	88	11	50	15	40	6	37	1.73
139635--139665	13	2.5	13	94	5	55	19	16	6	58	1.59
139674--139754	41	2.0	41	85	4	110	27	16	7	49	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140307--140369	30	2.2	28	85	5	81	28	9	7	53	1.61
140773--140841	22	3.4	22	62	25	60	15	23	0	60	1.35
140776--140852	39	2.0	38	97	2	145	16	18	0	64	1.28
140779--140835	14	4.3	14	66	20	50	15	21	0	63	1.31
140781--140864	39	2.2	39	91	4	134	17	21	0	60	1.36
141172--141245	30	2.5	30	90	0	121	35	24	21	18	1.96
141633--141739	53	2.0	53	92	0	178	24	24	20	30	1.98
154845--154897	26	2.0	26	100	0	106	39	7	22	30	1.82
158708--158752	14	3.0	15	90	9	65	86	8	0	4	0.69
159875--159969	31	3.1	31	81	1	93	36	26	17	18	1.94
162195--162272	40	2.0	40	89	0	120	16	8	17	56	1.65
162213--162272	20	3.0	20	67	26	54	16	10	18	55	1.69
163024--164053	321	3.2	318	85	4	1388	36	13	16	33	1.88
164077--164573	250	2.0	246	85	5	680	36	13	14	36	1.84
164326--165529	311	3.8	317	85	5	1595	34	14	15	35	1.88
165532--167978	323	7.8	322	77	10	2193	34	14	16	34	1.89
166459--167013	275	2.0	275	85	6	748	35	12	15	36	1.85
166136--167974	639	3.0	594	79	8	1573	34	14	16	34	1.89
166737--167978	319	3.9	319	84	4	1613	34	14	16	34	1.89
168712--168772	31	1.9	31	86	6	86	45	9	4	39	1.59
169339--169370	14	2.3	14	94	0	55	68	0	9	21	1.17
169829--169861	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177569--177600	16	2.0	16	100	0	64	43	18	12	25	1.85
179993--180060	31	2.2	31	84	7	84	39	4	14	41	1.66
184635--184679	21	2.1	21	92	8	74	33	8	6	51	1.59
185710--185734	2	12.5	2	100	0	50	48	0	0	52	1.00
190075--190113	19	2.1	19	85	9	53	5	23	5	66	1.32
196436--196635	103	1.9	105	87	4	298	33	24	13	29	1.93
197702--197803	31	3.4	31	74	15	122	36	17	20	25	1.94
197897--198001	31	3.5	31	71	10	108	25	20	18	36	1.95
197833--197997	60	2.8	60	84	3	215	26	19	18	35	1.95
201287--201346	16	3.7	16	80	10	59	53	0	1	45	1.10
208037--208073	5	7.4	5	100	0	74	21	18	0	59	1.38
253122--253174	3	17.7	3	80	0	61	30	0	33	35	1.58
253123--253177	21	2.6	21	88	0	83	30	0	34	34	1.58
258089--258115	4	6.8	4	100	0	54	0	22	0	77	0.76
264302--264334	6	5.7	6	96	3	59	87	0	12	0	0.53
272627--272653	2	13.5	2	100	0	54	0	0	48	51	1.00

Tables:   1

The End!