genome.fa.s10901.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010901.1 Corchorus capsularis cultivar CVL-1 contig10922, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157504

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--33	2	16.5	2	100	0	66	48	0	0	51	1.00
5914--5970	28	2.0	28	90	6	89	40	21	17	21	1.92
11227--11387	31	5.5	31	76	13	142	18	21	26	34	1.96
11276--11378	53	1.9	53	88	0	152	18	19	25	36	1.94
12147--12230	32	2.6	32	92	0	132	16	42	27	13	1.85
12296--12390	33	2.9	33	85	0	109	12	32	42	12	1.81
12480--12551	32	2.2	32	92	0	117	11	48	33	6	1.65
12496--12629	32	4.2	32	76	3	117	10	35	37	16	1.83
14775--14894	64	1.9	64	84	6	163	32	14	16	36	1.89
15008--15124	60	2.0	60	87	0	171	36	11	15	35	1.84
18063--18602	266	2.0	266	97	0	1028	34	20	10	34	1.87
19204--19251	22	2.2	22	92	0	78	18	39	29	12	1.88
39936--39972	17	2.2	17	95	0	65	43	13	0	43	1.44
40029--40242	109	2.0	106	89	6	324	46	7	11	34	1.68
40659--40717	31	1.9	31	96	0	109	45	1	16	35	1.58
40815--40852	16	2.4	16	86	0	58	65	5	7	21	1.38
46816--46853	20	1.9	20	88	0	58	31	7	0	60	1.25
47394--47441	19	2.6	18	78	18	53	35	8	25	31	1.85
77686--77716	14	2.2	14	100	0	62	6	6	6	80	1.02
79005--79707	117	6.0	117	85	4	818	38	10	36	13	1.81
89953--89982	16	1.9	16	93	6	53	0	16	0	83	0.65
95355--95379	1	25.0	1	100	0	50	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103013--103048	18	1.9	19	94	5	65	55	0	13	30	1.39
106790--106816	1	27.0	1	100	0	54	100	0	0	0	0.00
113564--113608	1	45.0	1	100	0	90	100	0	0	0	0.00
114267--114305	20	2.0	20	90	5	62	41	5	12	41	1.65
115617--115658	11	3.8	11	90	0	66	45	4	2	47	1.36
115617--115659	22	2.0	22	95	0	77	44	4	4	46	1.45
115617--115663	11	4.3	11	83	5	60	44	4	4	46	1.42
123308--123342	16	2.2	16	89	0	52	14	45	2	37	1.59
130336--130381	23	2.0	23	95	0	83	28	8	23	39	1.84
133420--133476	30	1.9	30	89	7	89	40	15	19	24	1.90
133419--133488	30	2.4	29	81	11	81	45	14	17	22	1.84
134543--134608	31	2.2	31	86	8	91	27	18	25	28	1.98
135032--135100	36	1.9	36	93	0	120	43	4	4	47	1.42
139343--139521	90	2.0	88	84	6	236	30	15	14	39	1.87
141084--141365	150	1.9	150	95	0	510	23	18	15	42	1.88
147109--147145	15	2.5	15	100	0	74	21	5	43	29	1.75
151064--151159	44	2.1	45	86	7	131	41	7	23	27	1.81
152271--152309	18	2.2	18	100	0	78	33	20	17	28	1.96
152348--152459	54	2.1	54	93	3	190	25	19	33	21	1.97
152402--152621	69	3.1	69	87	3	323	27	20	30	21	1.98
152402--152637	72	3.3	69	85	5	274	26	20	30	22	1.98
153347--153383	9	3.9	10	86	10	51	89	10	0	0	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153347--153383	14	2.6	14	91	4	56	89	10	0	0	0.49
153347--153384	5	8.0	5	88	8	53	86	13	0	0	0.56

Tables:   1

The End!