Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010902.1 Corchorus capsularis cultivar CVL-1 contig10923, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 33362
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32


Found at i:3029 original size:35 final size:35

Alignment explanation


    Indices: 2990--3059  Score: 140
    Period size: 35  Copynumber: 2.0  Consensus size: 35

       2980 AAATATTTCC

                                               
       2990 ACCTTTTTGTATGGACTATGGAGTCCAATTATATT
          1 ACCTTTTTGTATGGACTATGGAGTCCAATTATATT

                                               
       3025 ACCTTTTTGTATGGACTATGGAGTCCAATTATATT
          1 ACCTTTTTGTATGGACTATGGAGTCCAATTATATT

       3060 GTAAACAAAT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   35  1.00

ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43


Consensus pattern (35 bp):   
ACCTTTTTGTATGGACTATGGAGTCCAATTATATT

Found at i:31793 original size:2 final size:2

Alignment explanation


    Indices: 31781--31819  Score: 69
    Period size: 2  Copynumber: 19.5  Consensus size: 2

      31771 TGGCATAATA

                  *                                                   
      31781 AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

      31820 CACTAGTAAA


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.