Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010908.1 Corchorus capsularis cultivar CVL-1 contig10929, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18949

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1213--1561
107
3.3
107
92
3
555
40
9
9
40
1.70
2825--2865
22
1.9
21
85
5
55
46
12
4
36
1.63
5491--5797
167
1.8
165
85
7
433
36
11
8
43
1.71
5812--5849
19
2.0
20
85
15
53
28
5
2
63
1.30
6021--6196
22
8.0
21
74
9
129
35
9
17
37
1.83
6018--6149
66
2.0
66
83
5
169
35
10
16
37
1.84
6021--6169
44
3.3
45
83
9
164
36
10
16
36
1.83
6280--6334
22
2.5
22
74
11
58
34
9
21
34
1.85
6370--6620
22
11.5
22
74
9
131
42
10
14
32
1.79
6370--6617
44
5.7
44
72
7
168
42
10
14
32
1.79
6791--6860
22
3.1
23
77
4
72
50
7
15
27
1.70
6764--6863
44
2.3
44
79
10
123
45
8
14
33
1.73
6868--6952
23
3.7
23
80
1
91
42
5
12
38
1.68
6867--6973
45
2.4
44
77
10
108
40
8
13
38
1.74
6913--6993
22
3.6
22
83
1
90
38
11
9
40
1.74
6936--7129
22
8.8
21
67
19
85
34
11
13
40
1.81
7030--7128
45
2.2
43
81
10
110
35
11
14
39
1.81
7162--7200
12
3.4
11
82
10
51
66
2
2
28
1.18
12347--12386
2
20.0
2
87
10
55
50
2
2
45
1.28

Tables:   1

The End!