Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010911.1 Corchorus capsularis cultivar CVL-1 contig10932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26574

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
471--514
19
2.4
18
85
11
54
0
27
0
72
0.85
604--635
12
2.7
12
95
0
55
0
43
46
9
1.35
1648--1685
18
2.1
18
100
0
76
50
10
0
39
1.37
2840--2866
7
3.9
7
100
0
54
25
14
14
44
1.84
2863--2898
18
2.0
18
100
0
72
27
5
11
55
1.57
6100--6171
33
2.1
35
85
10
96
47
12
13
26
1.79
9032--9225
105
1.9
104
86
1
280
34
17
15
32
1.91
13091--13132
20
2.1
20
86
0
57
14
23
19
42
1.87
16819--16869
24
2.1
24
81
0
57
68
5
11
13
1.37
21399--21441
2
21.5
2
100
0
86
51
0
48
0
1.00
22198--22233
19
1.9
19
94
5
65
22
5
27
44
1.75
23702--24131
21
20.5
21
69
19
204
19
21
4
54
1.61
23708--23900
7
28.3
7
67
13
98
18
22
2
56
1.54
23768--23889
34
3.6
34
84
1
163
19
22
1
56
1.51
23871--24081
7
29.7
7
67
6
57
18
20
5
54
1.63
24000--24136
14
9.7
14
66
23
74
23
19
2
54
1.58
23986--24102
28
4.2
27
68
18
78
23
20
3
52
1.61
23863--24136
43
6.4
42
85
6
322
20
20
5
54
1.63
24117--24171
28
2.0
28
82
6
69
16
23
5
54
1.63
24855--24919
25
2.6
25
80
2
67
52
20
10
16
1.73

Tables:   1

The End!