Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010923.1 Corchorus capsularis cultivar CVL-1 contig10944, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63184

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--26
2
13.0
2
100
0
52
50
0
0
50
1.00
2006--2040
17
2.1
17
100
0
70
28
17
20
34
1.95
5607--5648
21
2.0
20
82
13
50
26
9
11
52
1.68
15967--16354
156
2.5
156
79
7
414
30
15
20
32
1.94
17107--17171
30
2.2
30
89
10
98
33
23
27
15
1.95
21134--21172
17
2.3
17
95
0
69
35
12
30
20
1.90
21489--21901
155
2.7
155
85
3
528
33
19
14
32
1.92
30628--30697
34
2.1
34
94
5
124
52
2
0
44
1.15
45868--45931
21
2.9
20
77
20
58
45
17
25
12
1.83
46751--46954
20
10.2
20
78
5
216
14
15
10
59
1.61
46751--46954
79
2.6
78
92
2
336
14
15
10
59
1.61
48256--48380
8
15.8
8
68
4
65
36
8
17
37
1.79
48256--48301
24
1.9
24
95
0
83
36
6
19
36
1.78
48256--48325
24
2.9
24
84
0
77
37
7
18
37
1.78
48258--48397
40
3.5
39
90
2
199
37
9
16
36
1.81
49462--49600
69
2.0
69
97
0
260
21
17
17
43
1.88
54739--54766
2
14.0
2
100
0
56
50
0
0
50
1.00
58085--58113
2
14.5
2
100
0
58
48
0
0
51
1.00
61570--61602
2
17.0
2
93
6
59
51
0
0
48
1.00
61665--61821
60
2.6
60
84
2
199
36
16
18
28
1.93
61723--61854
31
4.3
31
75
11
137
38
16
18
25
1.92
61885--62048
59
2.7
61
91
3
262
28
18
18
33
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63131--63184
1
54.0
1
100
0
108
100
0
0
0
0.00

Tables:   1

The End!