Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010931.1 Corchorus capsularis cultivar CVL-1 contig10952, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96091

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11058--11102
21
2.1
21
91
0
72
55
17
13
13
1.69
16740--16897
83
1.9
83
100
0
316
29
39
12
18
1.87
17957--18031
22
3.4
22
98
0
141
22
14
40
22
1.91
18310--18339
12
2.5
12
88
0
51
6
50
0
43
1.28
23300--23328
15
1.9
15
100
0
58
41
13
6
37
1.72
24812--24852
21
2.0
21
95
0
73
41
7
34
17
1.77
27177--27219
6
7.2
6
89
0
50
9
48
0
41
1.35
27178--27219
12
3.5
12
93
0
75
7
50
0
42
1.30
27178--27219
18
2.3
18
87
0
66
7
50
0
42
1.30
35062--35087
1
26.0
1
100
0
52
0
0
100
0
0.00
42858--43434
22
26.6
22
69
9
187
35
14
10
39
1.81
43170--43249
23
3.5
23
84
1
99
38
13
6
41
1.70
43126--43249
45
2.8
45
79
10
121
37
13
8
39
1.76
43193--43309
60
2.0
60
84
3
155
35
15
8
41
1.78
43383--43434
20
2.6
20
87
0
77
26
17
11
44
1.83
43542--43762
22
10.0
22
71
10
130
33
14
9
42
1.78
43788--43927
22
6.4
21
74
13
97
36
19
7
36
1.81
44015--44101
22
4.0
21
71
14
77
36
17
9
36
1.82
44269--44306
19
2.0
20
85
15
53
63
2
5
28
1.30
44935--45004
29
2.4
29
85
2
86
35
30
12
21
1.91
52977--53003
2
13.5
2
100
0
54
51
0
0
48
1.00
54209--54250
22
1.9
22
95
0
75
26
30
14
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65306--65396
30
3.0
30
95
0
164
25
31
14
28
1.94
66960--67335
126
3.0
126
97
0
698
31
18
16
34
1.93
70090--70125
2
19.0
2
88
11
58
50
0
0
50
1.00
70866--70904
3
13.0
3
100
0
78
33
0
0
66
0.92
90225--90271
20
2.4
20
96
3
87
34
4
23
38
1.74
94726--94758
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!