Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010933.1 Corchorus capsularis cultivar CVL-1 contig10954, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11522
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33


Found at i:979 original size:7 final size:7

Alignment explanation


    Indices: 967--1001  Score: 61
    Period size: 7  Copynumber: 5.0  Consensus size: 7

        957 CTACTAACTC

                   
        967 TTTTGTA
          1 TTTTGTA

                   
        974 TTTTGTA
          1 TTTTGTA

                   
        981 TTTTGTA
          1 TTTTGTA

            *      
        988 CTTTGTA
          1 TTTTGTA

                   
        995 TTTTGTA
          1 TTTTGTA

       1002 AGTAGTTTTA


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   7   26  1.00

ACGTcount: A:0.14, C:0.03, G:0.14, T:0.69


Consensus pattern (7 bp):   
TTTTGTA

Found at i:2196 original size:17 final size:17

Alignment explanation


    Indices: 2174--2215  Score: 52
    Period size: 17  Copynumber: 2.6  Consensus size: 17

       2164 CATATAATTT

                           * 
       2174 TATATAT-TA-ATTTGA
          1 TATATATATATATTTCA

                             
       2189 TATATATATATATTTCA
          1 TATATATATATATTTCA

                 *    
       2206 TATATGTATA
          1 TATATATATA

       2216 AATATTCATG


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  15    7  0.30
  16    2  0.09
  17   14  0.61

ACGTcount: A:0.40, C:0.02, G:0.05, T:0.52


Consensus pattern (17 bp):   
TATATATATATATTTCA
Done.