genome.fa.s10937.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010937.1 Corchorus capsularis cultivar CVL-1 contig10958, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78571

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3505--3604	30	3.0	33	85	8	116	53	8	17	22	1.69
3526--3611	30	2.7	32	89	7	122	53	8	15	23	1.68
3620--3676	22	2.6	21	83	10	62	52	5	21	21	1.66
3643--3690	22	2.3	21	86	13	64	54	4	20	20	1.61
3672--4030	55	6.5	55	91	0	558	50	7	16	25	1.72
3755--3840	26	3.2	26	64	20	68	51	6	18	23	1.70
3714--3796	19	4.3	21	66	25	58	48	7	18	26	1.74
3715--3859	29	5.2	29	61	21	85	48	7	17	25	1.73
3909--3995	26	3.2	26	69	20	79	54	8	14	22	1.67
3924--4002	29	3.0	25	68	21	70	54	7	16	21	1.67
4221--4296	36	2.1	36	83	7	102	51	3	25	19	1.64
4249--4340	14	6.3	14	68	14	53	55	2	21	20	1.54
4259--4375	22	5.5	22	75	9	91	58	2	20	18	1.51
4321--4552	7	34.1	7	65	19	91	56	3	24	16	1.56
4357--4419	26	2.4	26	78	5	65	55	1	26	15	1.50
4371--4523	34	4.5	34	83	8	206	54	3	24	16	1.58
4506--4541	12	2.8	12	91	8	54	52	0	30	16	1.44
4480--4636	54	2.7	57	81	14	185	52	3	27	16	1.59
4510--4548	19	2.1	19	90	0	60	51	2	28	17	1.59
26667--27610	447	2.1	445	85	5	1294	41	17	12	28	1.86
29625--29892	144	1.9	145	88	3	407	35	10	16	38	1.82
30904--31180	149	1.9	148	87	5	407	28	15	17	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30904--31179	74	3.7	73	83	6	326	28	15	17	38	1.91
32676--32838	31	5.5	31	78	12	164	17	23	27	31	1.96
32727--32829	53	1.9	53	94	0	179	15	21	28	34	1.94
46931--46963	16	2.1	16	100	0	66	21	24	24	30	1.99
51799--51851	26	2.1	26	89	3	81	37	11	15	35	1.83
52149--52188	20	1.9	22	90	10	66	55	0	0	45	0.99
56041--56067	6	4.5	6	100	0	54	66	0	14	18	1.25
57251--57302	27	1.9	27	88	0	77	32	32	1	32	1.69
60562--60606	23	2.0	23	87	8	67	51	0	11	37	1.38
60720--61616	446	2.0	433	79	8	958	42	12	15	29	1.83
62927--62989	31	2.0	31	87	0	90	26	9	9	53	1.64
69969--70036	32	2.1	32	89	5	102	13	48	25	13	1.78
73863--73909	24	1.9	24	82	4	58	31	2	29	36	1.70
77769--77829	32	1.9	32	100	0	122	22	18	32	26	1.97
77768--77844	32	2.5	32	87	4	104	25	16	31	25	1.97

Tables:   1

The End!