Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010939.1 Corchorus capsularis cultivar CVL-1 contig10960, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78270

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
398--440
21
2.0
21
90
0
68
20
4
4
69
1.25
4740--4781
20
2.1
20
90
0
66
21
4
4
69
1.26
25748--25852
53
2.0
53
84
0
138
25
16
21
36
1.94
26717--26747
3
10.3
3
92
0
53
70
0
29
0
0.87
36924--36953
2
15.5
2
93
6
53
53
0
0
46
1.00
40110--40148
2
20.5
2
87
10
55
46
0
0
53
1.00
41339--41937
299
2.0
299
94
0
1047
35
25
10
27
1.89
45474--45513
19
2.2
19
90
4
64
32
20
2
45
1.64
47179--47210
16
2.0
16
93
0
55
53
21
6
18
1.67
47304--47370
25
2.7
25
85
0
71
19
11
41
26
1.86
47326--47383
25
2.5
23
83
10
66
15
15
43
25
1.86
48654--48686
6
5.5
6
100
0
66
54
15
0
30
1.41
48683--48729
13
3.7
13
91
2
78
55
8
14
21
1.66
48683--48735
25
2.1
25
86
6
72
56
9
13
20
1.64
51811--51840
12
2.5
12
94
0
51
16
13
3
66
1.37
51856--51898
22
2.0
22
90
0
68
41
9
6
41
1.64
53506--53545
19
2.2
19
90
4
64
32
20
2
45
1.64
54418--54459
15
2.8
15
88
0
57
61
0
2
35
1.09
56436--56597
36
4.6
36
82
4
222
32
24
5
37
1.78
56418--56597
69
2.6
69
86
2
243
31
22
5
40
1.77
56433--56622
105
1.8
105
96
0
353
30
23
4
42
1.74
56644--57541
39
24.1
39
85
9
1121
25
20
7
45
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56644--57526
74
11.9
74
86
6
1113
25
20
7
45
1.78
57689--57765
40
1.9
40
81
5
93
32
19
6
41
1.77
61007--61063
22
2.6
21
77
5
60
38
7
12
42
1.70
67761--67922
60
2.7
60
86
0
216
35
19
19
26
1.95
67822--67922
31
3.3
31
71
20
113
37
20
18
22
1.94
67952--68055
31
3.4
31
72
15
117
24
17
20
38
1.93
67954--68092
60
2.3
60
91
2
226
25
17
17
38
1.92
68981--69025
19
2.4
19
100
0
90
35
11
8
44
1.71
69257--69297
21
2.0
21
85
0
55
58
0
2
39
1.11
69643--69690
15
3.1
16
79
14
55
70
0
6
22
1.09
76836--76866
16
1.9
16
93
0
53
48
6
0
45
1.28

Tables:   1

The End!