Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010940.1 Corchorus capsularis cultivar CVL-1 contig10961, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26402

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--64
2
32.0
2
100
0
128
0
50
0
50
1.00
6364--6392
2
14.5
2
100
0
58
51
0
0
48
1.00
7503--7559
2
30.0
2
86
10
75
50
3
0
45
1.18
8386--8872
250
1.9
253
90
4
775
34
18
22
24
1.96
8864--8906
15
2.8
15
82
3
59
48
0
6
44
1.29
9223--9302
21
3.8
21
76
3
88
40
11
11
37
1.77
9223--9324
43
2.4
43
83
6
118
40
11
10
37
1.77
11370--11394
2
12.5
2
100
0
50
52
0
0
48
1.00
11608--11648
2
20.5
2
85
9
57
48
2
2
46
1.28
11709--11813
22
4.8
22
82
5
124
37
14
10
38
1.80
11710--11813
43
2.4
44
83
1
129
37
13
10
38
1.79
11839--11878
21
1.9
21
84
0
53
30
10
7
52
1.62
11863--11916
22
2.5
20
75
13
54
24
16
7
51
1.69
14043--14075
2
16.5
2
100
0
66
51
0
0
48
1.00
14745--14990
130
1.9
131
94
0
440
33
24
15
26
1.95
15990--16072
42
2.0
42
95
0
148
20
12
32
34
1.89
16968--17029
24
2.6
24
86
0
88
43
9
9
37
1.71
17555--17609
27
2.0
27
89
0
83
30
45
21
1
1.62
18344--18392
6
8.5
6
76
17
50
34
42
18
4
1.69
18344--18392
11
4.2
12
73
17
50
34
42
18
4
1.69
18382--18440
16
3.7
16
83
0
82
45
35
10
8
1.68
24291--24319
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!