Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010944.1 Corchorus capsularis cultivar CVL-1 contig10965, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43867

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3295--3346
27
1.9
27
96
0
95
36
15
15
32
1.89
4029--4274
107
2.4
99
78
10
273
40
7
9
42
1.66
4074--4295
107
2.1
104
86
5
304
39
7
9
43
1.66
4596--4627
1
32.0
1
100
0
64
0
0
0
100
0.00
4737--4800
33
1.9
33
96
0
119
14
23
23
39
1.91
10213--10250
3
12.3
3
94
5
67
0
34
2
63
1.09
16425--16464
3
13.3
3
100
0
80
32
0
0
67
0.91
17369--17565
55
3.6
55
79
8
238
35
19
18
27
1.95
17369--17598
110
2.1
110
93
0
388
35
19
17
27
1.94
17369--17598
55
4.2
54
76
9
207
35
19
17
27
1.94
20545--20592
25
2.0
24
88
8
71
16
14
20
47
1.82
21131--21174
23
1.9
23
100
0
88
25
34
0
40
1.56
22997--23041
22
2.1
22
87
4
65
64
0
11
24
1.26
23013--23056
17
2.6
16
82
10
52
63
0
4
31
1.14
22763--23087
78
4.2
78
92
0
508
50
0
13
36
1.45
23905--24180
110
2.5
110
91
5
432
48
1
10
38
1.49
24923--24989
32
2.1
32
83
5
82
25
13
23
37
1.92
30618--30719
51
2.0
51
100
0
204
19
23
29
27
1.98
37835--37872
14
2.8
14
84
4
51
63
0
5
31
1.17

Tables:   1

The End!