Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010945.1 Corchorus capsularis cultivar CVL-1 contig10966, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75652

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--36
15
2.3
15
84
5
50
60
0
36
3
1.12
191--235
21
2.0
21
83
8
54
31
0
24
44
1.54
1171--1324
81
1.9
81
86
2
220
26
7
33
32
1.84
1171--1345
81
2.1
81
84
5
219
25
6
34
32
1.83
12495--12524
13
2.3
13
94
0
51
76
0
16
6
0.99
32453--32525
29
2.5
29
95
0
128
23
15
20
41
1.90
37749--37830
30
2.7
30
87
10
114
29
17
14
39
1.89
37749--37828
31
2.6
30
88
9
110
28
17
15
38
1.90
48967--49059
33
2.8
33
79
7
84
23
38
29
8
1.84
48986--49093
33
3.3
33
84
0
117
23
41
26
8
1.82
54870--54933
33
1.9
33
87
0
92
23
39
28
9
1.86
58328--58398
33
2.2
33
84
0
88
23
9
22
43
1.83
58427--58565
33
4.2
33
92
1
244
30
9
17
41
1.81
58427--58565
65
2.1
66
97
1
262
30
9
17
41
1.81
58955--59013
30
2.0
30
90
6
93
30
16
30
22
1.96
63084--63117
8
4.1
8
85
7
50
58
14
2
23
1.50
63190--63219
15
1.9
16
93
6
53
86
0
0
13
0.57
63190--63221
16
1.9
17
93
6
57
84
0
0
15
0.63
64690--64777
33
2.7
33
89
0
122
31
11
17
39
1.85
64688--64792
33
3.3
31
84
6
113
34
10
17
38
1.84

Tables:   1

The End!