Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010946.1 Corchorus capsularis cultivar CVL-1 contig10967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55891

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
183--226
21
2.1
21
91
4
72
22
29
22
25
1.99
4105--4147
15
2.9
15
96
0
77
41
23
27
6
1.80
4976--5041
21
3.1
21
82
8
80
27
51
13
7
1.68
5490--5523
9
3.9
9
88
3
52
35
0
8
55
1.31
5489--5523
17
1.9
18
88
11
54
37
0
8
54
1.31
9765--9839
30
2.5
30
84
4
98
26
30
30
12
1.92
11914--12005
46
2.1
43
84
11
118
31
19
11
36
1.88
16584--16663
40
2.0
40
92
0
133
35
7
15
42
1.75
16996--17055
31
1.9
31
89
0
93
30
11
11
46
1.76
17203--17276
29
2.5
31
84
4
98
45
13
14
25
1.82
17439--17500
31
2.0
31
96
0
115
48
4
16
30
1.67
24538--24584
18
2.6
18
93
0
76
6
40
17
36
1.75
30825--30851
14
1.9
14
100
0
54
37
3
14
44
1.63
32526--32569
21
2.1
21
100
0
88
9
18
22
50
1.75
33470--33494
13
1.9
13
100
0
50
32
16
4
48
1.64
34802--34855
19
2.9
18
78
5
56
74
0
24
1
0.92
34969--35033
29
2.2
30
86
2
87
44
10
15
29
1.80
40537--40573
18
2.1
19
85
10
51
56
18
13
10
1.66
41373--41397
11
2.3
11
100
0
50
8
8
0
84
0.79
53265--53296
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!