Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010949.1 Corchorus capsularis cultivar CVL-1 contig10970, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5522
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.31


Found at i:5314 original size:23 final size:23

Alignment explanation


    Indices: 5288--5384  Score: 97
    Period size: 23  Copynumber: 4.0  Consensus size: 23

       5278 AATTCATTAC

                                   
       5288 ACATAATTTTCCATATTAAGCAT
          1 ACATAATTTTCCATATTAAGCAT

                       **  *            
       5311 ACATAATTGACAACCTTATTTCAAGCAT
          1 ACATAATT---TTCCATA-TT-AAGCAT

             *                     
       5339 ATATAATTTTCCATATTAAGCAT
          1 ACATAATTTTCCATATTAAGCAT

                     *             
       5362 ACATAA-TTCCCATATTAAGCAT
          1 ACATAATTTTCCATATTAAGCAT

             
       5384 A
          1 A

       5385 GCATTTCAAT


Statistics
Matches: 60,  Mismatches: 9, Indels: 11
        0.75            0.11        0.14

Matches are distributed among these distances:
  22   16  0.27
  23   19  0.32
  24    2  0.03
  25    4  0.07
  26    4  0.07
  27    2  0.03
  28   13  0.22

ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36


Consensus pattern (23 bp):   
ACATAATTTTCCATATTAAGCAT
Done.