Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010952.1 Corchorus capsularis cultivar CVL-1 contig10973, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3184
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31


Found at i:544 original size:21 final size:21

Alignment explanation


    Indices: 519--558  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        509 ACCATGGACG

                                 
        519 AGACAGATACAAAAATGAAAA
          1 AGACAGATACAAAAATGAAAA

                    *  *       
        540 AGACAGATTCAGAAATGAA
          1 AGACAGATACAAAAATGAA

        559 GAAGTTCAAC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.60, C:0.10, G:0.17, T:0.12


Consensus pattern (21 bp):   
AGACAGATACAAAAATGAAAA
Done.