Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010954.1 Corchorus capsularis cultivar CVL-1 contig10975, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5412
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:4681 original size:28 final size:27

Alignment explanation


    Indices: 4646--4706  Score: 97
    Period size: 27  Copynumber: 2.3  Consensus size: 27

       4636 CTAACCCTAA

                                       
       4646 TTTTTTTTTATCGACGCAAAAAC-AAT
          1 TTTTTTTTTATCGACGCAAAAACAAAT

                        *               
       4672 TTTTTCTTTTATTGACGCAAAAACAAAT
          1 TTTTT-TTTTATCGACGCAAAAACAAAT

                   
       4700 TTTTTTT
          1 TTTTTTT

       4707 ATCGGCGCAA


Statistics
Matches: 32,  Mismatches: 1, Indels: 3
        0.89            0.03        0.08

Matches are distributed among these distances:
  26    5  0.16
  27   19  0.59
  28    8  0.25

ACGTcount: A:0.31, C:0.13, G:0.07, T:0.49


Consensus pattern (27 bp):   
TTTTTTTTTATCGACGCAAAAACAAAT

Found at i:5050 original size:6 final size:6

Alignment explanation


    Indices: 5035--5066  Score: 57
    Period size: 6  Copynumber: 5.5  Consensus size: 6

       5025 AAAGCAAAGA

                                                  
       5035 AAAT-T AAATCT AAATCT AAATCT AAATCT AAA
          1 AAATCT AAATCT AAATCT AAATCT AAATCT AAA

       5067 GCAGATTATA


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    4  0.15
   6   22  0.85

ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31


Consensus pattern (6 bp):   
AAATCT

Done.