Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010956.1 Corchorus capsularis cultivar CVL-1 contig10977, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11248
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34


Found at i:5936 original size:33 final size:33

Alignment explanation


    Indices: 5896--5977  Score: 103
    Period size: 33  Copynumber: 2.5  Consensus size: 33

       5886 AGCACAAGTG

                      *   * *                 
       5896 ACCGGCCACGTGACTTGGAGATGCCCGCG-CAAC
          1 ACCGGCCACGCGACATAGAGATGCCCG-GTCAAC

                    *                      * 
       5929 ACCGGCCATGCGACATAGAGATGCCCGGTCATC
          1 ACCGGCCACGCGACATAGAGATGCCCGGTCAAC

                            
       5962 ACCGGCCACGCGACAT
          1 ACCGGCCACGCGACAT

       5978 GGCCATGTCC


Statistics
Matches: 42,  Mismatches: 6, Indels: 2
        0.84            0.12        0.04

Matches are distributed among these distances:
  32    1  0.02
  33   41  0.98

ACGTcount: A:0.23, C:0.37, G:0.28, T:0.12


Consensus pattern (33 bp):   
ACCGGCCACGCGACATAGAGATGCCCGGTCAAC
Done.