Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010958.1 Corchorus capsularis cultivar CVL-1 contig10979, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16320
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.35


Found at i:2286 original size:22 final size:22

Alignment explanation


    Indices: 2260--2301  Score: 75
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       2250 TTTATAACTA

                         *        
       2260 GGGGCTAAACCTGGATTTAAGG
          1 GGGGCTAAACCTGAATTTAAGG

                                
       2282 GGGGCTAAACCTGAATTTAA
          1 GGGGCTAAACCTGAATTTAA

       2302 TTTATTTCCT


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  22   19  1.00

ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24


Consensus pattern (22 bp):   
GGGGCTAAACCTGAATTTAAGG
Done.