Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010960.1 Corchorus capsularis cultivar CVL-1 contig10981, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108982

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1340--1961
199
3.1
199
86
0
904
32
12
18
35
1.89
1794--2132
171
2.0
170
87
4
495
32
13
18
35
1.90
1964--2331
194
1.9
195
83
1
479
32
14
19
33
1.92
3193--4006
198
4.1
198
86
3
1087
33
14
18
33
1.91
10538--10562
10
2.5
10
100
0
50
60
0
20
20
1.37
12377--12429
24
2.2
24
86
0
70
39
9
1
49
1.46
13226--13277
26
1.9
28
84
7
72
17
15
9
57
1.64
13263--13334
22
3.3
22
78
5
74
27
11
8
52
1.65
15136--15206
28
2.5
28
100
0
142
45
4
16
33
1.67
15925--15963
21
1.9
21
89
5
62
33
2
7
56
1.41
17105--17130
2
13.0
2
100
0
52
50
0
0
50
1.00
17831--18214
191
2.0
191
98
0
741
45
9
7
38
1.64
21272--21300
2
14.5
2
100
0
58
51
0
0
48
1.00
21948--21981
17
2.1
17
88
5
52
35
2
5
55
1.39
41254--41409
78
2.0
78
98
0
303
31
21
16
30
1.95
43567--43600
11
3.2
10
84
15
50
50
17
2
29
1.61
44347--44427
33
2.5
33
87
0
117
25
45
19
8
1.79
45433--45465
9
3.7
9
91
0
57
84
0
0
15
0.61
50852--50949
33
3.0
33
98
0
187
21
44
24
9
1.81
52509--52574
24
2.8
24
100
0
132
21
33
22
22
1.97
54569--54595
12
2.2
12
100
0
54
62
22
0
14
1.31
73362--73400
15
2.6
15
91
0
60
30
2
0
66
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73359--73405
15
3.0
15
84
6
58
29
2
2
65
1.15
77308--77337
15
2.0
15
100
0
60
26
0
26
46
1.53
78042--78130
45
2.0
45
84
6
119
30
12
16
40
1.86
80196--80250
25
2.2
25
96
0
101
18
23
1
56
1.51
80253--80283
16
1.9
16
93
0
53
9
19
6
64
1.45
80765--80810
23
2.0
23
83
8
58
56
2
2
39
1.24
83507--83592
45
1.9
45
97
0
163
24
23
18
33
1.97
90463--90490
2
14.0
2
100
0
56
0
0
50
50
1.00
90982--91020
16
2.3
16
82
8
51
43
35
5
15
1.69
93194--93518
175
1.9
175
85
5
460
32
26
14
26
1.95
100471--100530
30
2.0
30
90
0
93
13
26
31
28
1.94
100473--100538
30
2.2
30
86
0
87
15
27
30
27
1.96

Tables:   1

The End!