Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010961.1 Corchorus capsularis cultivar CVL-1 contig10982, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16171
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:12632 original size:30 final size:30

Alignment explanation


    Indices: 12598--12657  Score: 93
    Period size: 30  Copynumber: 2.0  Consensus size: 30

      12588 TGCCCGGCCT

                      *   *   *           
      12598 TGTGCGATTGGTCCTTGCCATGGCCGGTCA
          1 TGTGCGATTGCTCCATGCAATGGCCGGTCA

                                          
      12628 TGTGCGATTGCTCCATGCAATGGCCGGTCA
          1 TGTGCGATTGCTCCATGCAATGGCCGGTCA

      12658 CATGTGATCC


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  30   27  1.00

ACGTcount: A:0.13, C:0.27, G:0.32, T:0.28


Consensus pattern (30 bp):   
TGTGCGATTGCTCCATGCAATGGCCGGTCA

Found at i:14954 original size:14 final size:15

Alignment explanation


    Indices: 14926--14955  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

      14916 ATGTGTATGT

                           
      14926 ATTTTGGGTTTTGCA
          1 ATTTTGGGTTTTGCA

                           
      14941 ATTTTGGG-TTTGCA
          1 ATTTTGGGTTTTGCA

             
      14955 A
          1 A

      14956 GATCTTGATT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    7  0.47
  15    8  0.53

ACGTcount: A:0.17, C:0.07, G:0.27, T:0.50


Consensus pattern (15 bp):   
ATTTTGGGTTTTGCA
Done.