Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010965.1 Corchorus capsularis cultivar CVL-1 contig10986, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24779

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4595--4713
33
3.5
33
80
8
125
23
41
26
8
1.83
7643--7831
36
5.3
36
80
9
226
44
8
20
25
1.80
7643--7855
74
2.9
73
87
4
288
44
8
21
25
1.80
7884--8248
36
9.8
36
75
12
283
48
10
15
24
1.77
8048--8089
11
3.8
11
87
0
66
52
7
28
11
1.64
8039--8089
22
2.3
22
86
0
66
54
5
25
13
1.61
8092--8266
72
2.4
72
82
8
198
46
12
13
26
1.79
8304--8393
11
8.1
11
83
2
108
54
6
27
11
1.60
8382--8801
35
11.8
35
80
8
413
42
9
22
25
1.83
8382--8766
108
3.6
107
87
5
483
42
9
23
25
1.83
10268--10333
24
2.6
25
83
7
80
39
12
6
42
1.67
13031--13077
19
2.6
18
74
12
51
29
0
4
65
1.11
13421--13455
11
3.2
11
83
0
52
77
17
5
0
0.96
13913--13947
19
1.9
17
88
11
52
57
11
0
31
1.34
13994--14042
22
2.2
22
82
7
55
59
8
2
30
1.38
14093--14183
32
2.8
33
89
3
139
9
35
27
27
1.88
15173--15247
29
2.5
31
82
4
91
46
10
17
25
1.80
15180--15247
31
2.3
29
82
5
82
48
10
17
23
1.78
15319--15393
29
2.5
31
82
4
91
25
17
10
46
1.80
23059--23085
7
3.9
7
100
0
54
29
25
29
14
1.95

Tables:   1

The End!