Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010966.1 Corchorus capsularis cultivar CVL-1 contig10987, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48110

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5638--5687
25
2.0
25
100
0
100
36
20
32
12
1.89
9620--9673
26
2.3
23
77
22
58
27
14
7
50
1.70
14076--14116
22
2.0
21
85
9
57
48
17
14
19
1.81
18998--19040
22
2.0
22
95
0
77
27
37
11
23
1.89
18802--19357
275
2.0
277
97
0
1053
31
27
15
24
1.96
19273--19315
22
2.0
22
95
0
77
27
37
11
23
1.89
19362--19463
23
4.4
23
82
2
116
21
43
16
18
1.88
30072--30175
27
3.8
27
81
1
118
39
25
18
17
1.92
47787--47830
21
2.1
21
86
0
61
25
29
9
36
1.86
47879--48004
33
3.8
33
81
4
139
17
41
30
11
1.84
47879--48026
65
2.3
65
81
6
167
17
40
30
11
1.85
47984--48090
32
3.3
32
82
2
126
9
35
41
14
1.77

Tables:   1

The End!