Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010969.1 Corchorus capsularis cultivar CVL-1 contig10990, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14284
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31


Found at i:661 original size:23 final size:22

Alignment explanation


    Indices: 603--662  Score: 63
    Period size: 23  Copynumber: 2.8  Consensus size: 22

        593 CAGCTGGCTA

                                  
        603 TTTTTTATTT-TTTT-TGTTTG
          1 TTTTTTATTTCTTTTCTGTTTG

              *                *    
        623 TTGTTT-TTTCTTTTTCCTTTTTG
          1 TTTTTTATTTC-TTTT-CTGTTTG

                             
        646 TTTTTTATTTCTTTTCT
          1 TTTTTTATTTCTTTTCT

        663 CTTATCTTCT


Statistics
Matches: 32,  Mismatches: 3, Indels: 8
        0.74            0.07        0.19

Matches are distributed among these distances:
  19    3  0.09
  20    5  0.16
  21    4  0.12
  22    2  0.06
  23   14  0.44
  24    4  0.12

ACGTcount: A:0.03, C:0.08, G:0.07, T:0.82


Consensus pattern (22 bp):   
TTTTTTATTTCTTTTCTGTTTG

Found at i:3003 original size:19 final size:18

Alignment explanation


    Indices: 2970--3005  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       2960 TTGAAATAAT

                              
       2970 TCTTCAATGATCTTCAAA
          1 TCTTCAATGATCTTCAAA

                     *        
       2988 TCTTCAAATTATCTTCAA
          1 TCTTC-AATGATCTTCAA

       3006 GAAATCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGATCTTCAAA
Done.