genome.fa.s10972.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010972.1 Corchorus capsularis cultivar CVL-1 contig10993, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39091

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5599--5632	8	4.2	8	88	0	50	35	0	23	41	1.55
9738--9818	25	3.1	25	77	13	83	17	19	2	60	1.47
9717--9874	82	1.9	83	82	13	202	17	20	3	57	1.55
9763--9876	57	2.0	57	86	5	160	18	18	4	58	1.55
9738--9883	57	2.7	57	81	10	155	19	19	3	57	1.55
9733--9999	26	10.2	26	73	17	173	21	19	2	56	1.54
9891--9977	28	3.1	28	83	8	115	24	17	2	56	1.52
9990--10081	7	12.9	7	74	8	78	17	23	2	56	1.52
9984--10030	14	3.3	14	80	11	51	21	25	2	51	1.59
9990--10071	36	2.3	36	91	0	137	18	23	2	56	1.54
10083--10174	27	3.5	25	77	10	85	28	15	3	53	1.57
10177--10210	14	2.4	14	80	0	50	17	20	2	58	1.51
10199--10232	16	2.1	17	88	5	52	17	20	2	58	1.51
10285--10346	16	3.8	17	76	18	69	17	27	3	51	1.61
10271--10348	32	2.4	32	93	4	131	17	26	3	51	1.63
10440--10512	32	2.4	31	84	11	89	24	26	2	46	1.66
10457--10529	32	2.3	32	83	4	85	21	24	5	47	1.72
10555--10716	55	2.9	56	91	4	260	24	18	6	50	1.71
12619--12689	34	2.1	34	100	0	142	11	23	15	49	1.77
13960--13987	14	2.0	14	100	0	56	35	14	28	21	1.92
22659--22699	10	4.3	10	87	6	50	26	4	4	63	1.35
22663--22703	3	13.0	3	85	10	55	29	4	2	63	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26568--26648	25	3.1	25	77	13	83	17	19	2	60	1.47
26547--26704	26	5.8	28	76	16	129	18	20	3	57	1.54
26547--26704	82	1.9	83	83	13	211	18	20	3	57	1.54
26593--26706	57	2.0	57	86	5	160	18	18	4	58	1.55
26568--26713	57	2.7	57	81	10	155	19	19	3	57	1.55
26735--26829	26	3.7	26	81	10	106	23	18	3	54	1.58
26721--26807	28	3.1	28	81	8	106	24	17	3	55	1.57
26803--26902	37	2.8	36	83	6	121	19	21	2	58	1.50
26650--26838	101	1.8	98	85	7	236	24	19	3	53	1.59
26851--26912	7	8.7	7	75	10	63	16	24	1	58	1.47
26858--26919	28	2.2	29	88	8	92	17	22	3	56	1.55
26957--27018	33	1.9	32	87	9	90	25	17	3	53	1.59
27008--27041	14	2.4	14	80	0	50	17	20	2	58	1.51
27030--27063	16	2.1	17	88	5	52	17	20	2	58	1.51
27082--27117	18	2.0	18	100	0	72	27	22	0	50	1.50
27084--27123	18	2.2	18	90	0	62	30	25	0	45	1.54
27038--27147	58	1.9	56	85	7	150	22	24	2	50	1.62
27134--27195	16	3.8	17	72	18	60	17	25	3	53	1.59
27120--27197	32	2.4	32	87	4	113	17	26	3	51	1.63
27397--27553	55	2.8	56	92	1	262	25	18	6	49	1.71
37329--37368	2	19.5	2	94	5	71	47	0	2	50	1.14
37675--37789	57	2.0	57	98	0	221	33	14	5	46	1.67

Tables:   1

The End!